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LRRfinder specifications

Information


Unique identifier OMICS_03531
Name LRRfinder
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for LRRfinder

LRRfinder in publications

 (21)
PMCID: 5545864
PMID: 28784091
DOI: 10.1186/s12864-017-3983-0

[…] amino acid sequences. we assessed the functional significance of positively selected sites by mapping these sites to the structural domains of each protein, which were predicted using the software lrrfinder [] with upper and lower boundaries fixed at 95% and 80%, respectively., additional file 1: fig. s1. additional file 2: table s1. additional file 3: table s2. additional file 4: table s3. […]

PMCID: 5314619
PMID: 28209121
DOI: 10.1186/s12862-017-0901-7

[…] domain families associated with wide variety of nuclear, signaling and extracellular proteins []. the structural organization of tlr domains in the studied tlrs was analyzed using smart. web based lrrfinder is derived from a large database of unique, naturally occurring lrrs (tlrrdb) allowing the identification of not only highly conserved lrr sequences, but also those which uniquely deviate […]

PMCID: 5176316
PMID: 28002449
DOI: 10.1371/journal.pone.0168776

[…] signature of resistance gene domains were further analysed. predicted domains were identified using coiled-coil prediction (andrei lupas, princetown university, princetown, new jersey, usa), lrrfinder (victoria offord, royal veterinary college, london, great britain) and cd-search (aron marchler-bauer and stephen h. bryant, ncbi, bethesda, maryland, usa). transposons were identified […]

PMCID: 4877655
PMID: 27216145
DOI: 10.1038/srep26705

[…] peptide, ectodomains, transmembrane region, and intracellular tir domains were predicted by signalp, smart, and tmhmm. the delimitation of each lrr module in the tlr ectodomains was defined by lrrfinder (). the structural information for the tlr ectodomains was used for the calibration of lrr module prediction. the structural element delimitations of these representative tlr sequences […]

PMCID: 4807771
PMID: 27015424
DOI: 10.1371/journal.ppat.1005513

[…] of bgtlr is composed of 3546 nucleotides. the open reading frame predicts a protein of 1181 amino acid residues. its ectodomain contains 23 lrr motifs spanning residues 3–725 as predicted by lrrfinder [] and scanprosite tools []. the tir domain is encoded by residues 899–1037, preceded by a transmembrane region on residues 849–870 (). there is no identifiable signal peptide in bgtlr […]


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LRRfinder institution(s)
Molecular Immunology Group, Department of Pathology and Infectious Diseases, Royal Veterinary College, Hawkshead Campus, Hawkshead Lane, North Mymms, Hertfordshire, UK

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