LS-SNP/PDB

• Rachel Karchin <karchin at jhu.edu>

Department of Bioinformatics, George Mason University, Fairfax, VA, USA; Department of Biomolecular Engineering, University of California, Santa Cruz, CA, USA; Department of Biomedical Engineering, Institute for Computational Medicine, Johns Hopkins University, 3400 N. Charles St., Baltimore, MD, USA

• (Ryan et al., 2009) LS-SNP/PDB: annotated non-synonymous SNPs mapped to Protein Data Bank structures. Bioinformatics.
  PMID: 19369493

• Animals
  • Homo sapiens

• (Thusberg et al., 2011) Performance of mutation pathogenicity prediction methods on missense variants. Human mutation.
  PMID: 21412949
• (Bendl et al., 2014) PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations. PLoS computational biology.
  PMID: 24453961
• (Martelotto et al., 2014) Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations. Genome biology.
  PMID: 25348012
• (Gonzalez-Perez et al., 2013) Computational approaches to identify functional genetic variants in cancer genomes. Nature methods.
  PMID: 23900255
• (Gnad et al., 2013) Assessment of computational methods for predicting the effects of missense mutations in human cancers. BMC genomics.
  PMID: 23819521