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LSD specifications

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Unique identifier OMICS_03233
Name LSD
Alternative name Leaf Senescence Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access File download, Browse
User data submission Not allowed
Version 2.0
Maintained No

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Publications for Leaf Senescence Database

LSD citations

 (3)
library_books

LEAFDATA: a literature curated database for Arabidopsis leaf development

2016
Plant Methods
PMCID: 4754890
PMID: 26884807
DOI: 10.1186/s13007-016-0115-9

[…] y keywords for phenotype or genes. Another collection accommodating cleared leaves with visible vascular architecture including 412 Arabidopsis pictures are available in the ClearedLeavesDB [, ]. The leaf senescence database (LSD) focuses on the last phase of leaf development that leads to organ death [–]. Manual and computational data were collected about senescence-associated genes (SAGs) from v […]

library_books

Generation and Analysis of a Large Scale Expressed Sequence Tag Database from a Full Length Enriched cDNA Library of Developing Leaves of Gossypium hirsutum L

2013
PLoS One
PMCID: 3795732
PMID: 24146870
DOI: 10.1371/journal.pone.0076443

[…] iss-Prot, using either blastn (E-value≤10−5) or blastx (E-value≤10−5) . To identify putative leaf SAGs and TFs, blastx (E-value≤10−5) searches against amino acid sequences of A. thaliana genes from a leaf senescence database (LSD) , and a comprehensive plant TF database (PlantTFDB) were used. Batch searches of the unigenes were performed using the local BLAST tools available at ftp://ftp.ncbi.nl […]

library_books

Genome Wide Evaluation of Histone Methylation Changes Associated with Leaf Senescence in Arabidopsis

2012
PLoS One
PMCID: 3299739
PMID: 22427974
DOI: 10.1371/journal.pone.0033151

[…] n transport. Senescence down-regulated genes (SDRGs) are enriched for cytoplasmic protein synthesis as well as chloroplast functions such as light harvesting, carbon fixation, and photorespiration. A leaf senescence database compiles senescence associated genes and orthologs from numerous plant species . Transcription factors that play a role in these global changes in gene expression have been id […]


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LSD institution(s)
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China; State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences and Center for Bioinformatics, Peking University, Beijing, China; Channing Division of Network Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, and Peking-Tsinghua Center for Life Sciences, Peking University, Beijing, China; State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences and Center for Bioinformatics, Peking University, Beijing, China

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