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Periodicity detection
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LSPR specifications
Information
| Unique identifier | OMICS_13353 |
|---|---|
| Name | LSPR |
| Software type | Package/Module |
| Interface | Command line interface |
| Restrictions to use | None |
| Output format | TXT |
| Operating system | Unix/Linux |
| Computer skills | Advanced |
| Stability | Stable |
| Requirements |
MATLAB
|
| Source code URL | http://bioinformatics.cau.edu.cn/LSPR/LSPR.zip |
| Maintained | Yes |
Taxon
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Plants and Fungi
- Arabidopsis thaliana
Versioning
No version available
Maintainer
- person_outline Zhen Su
Publication for LSPR
library_books
LSPR: an integrated periodicity detection algorithm for unevenly sampled temporal microarray data.
2011 Bioinformatics
PMID: 21296749
LSPR citation
library_books
Spectral Analysis on Time Course Expression Data: Detecting Periodic Genes Using a Real Valued Iterative Adaptive Approach
2013
Adv Bioinformatics
PMCID: 3600260
PMID: 23533399
DOI: 10.1155/2013/171530
[…] ormance using a detrended fluctuation analysis []. It used harmonic regression in the time domain for significance evaluation. The method was termed “Lomb-Scargle periodogram and harmonic regression (LSPR).” Basically, these methods consists of two steps: transferring the signals into the frequency (spectral) domain and then applying a significance evaluation test for the resulting peak in the spe […]
LSPR institution(s)
Division of Bioinformatics, State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing, China; Department of Applied Mathematics, College of Science, China Agricultural University, Beijing, China
LSPR funding source(s)
Supported by Ministry of Science and Technology of China (2006CB100105); College Student Research and Career-creation Program of Beijing (2010).
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