LTRdigest specifications

Unique identifier:
OMICS_09457
Interface:
Command line interface
Input data:
LTRdigest accepts sequence data in a variety of formats and a basic LTR annotation in GFF3 format as input. Protein domains are specified as profile HMMs in HMMER3 format.
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Output data:
It creates GFF3 and CSV annotations as well as FASTA sequence files for all detected features.
Computer skills:
Advanced
Maintained:
Yes

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LTRdigest support

Maintainer

  • Sascha Steinbiss <>

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Publications

Institution(s)

Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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