LTRdigest specifications

Information


Unique identifier OMICS_09457
Name LTRdigest
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data LTRdigest accepts sequence data in a variety of formats and a basic LTR annotation in GFF3 format as input. Protein domains are specified as profile HMMs in HMMER3 format.
Output data It creates GFF3 and CSV annotations as well as FASTA sequence files for all detected features.
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Maintainer


  • person_outline Sascha Steinbiss <>

Publication for LTRdigest

LTRdigest institution(s)
Center for Bioinformatics, University of Hamburg, Hamburg, Germany

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