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lumi

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Provides class infrastructure and associated methods to construct an Illumina analysis workflow pipeline starting with raw data through functional analysis. Besides supporting the existing algorithms for microarray data, the lumi package includes several unique parts: (i) a variance-stabilizing transformation that utilizes the technical replicates available on the Illumina microarray; (ii) normalization algorithms designed for Illumina microarray data and; iii) the nucleotide universal identifier annotation packages.

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lumi forum

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lumi classification

lumi specifications

Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU Lesser General Public License version 3.0
Version:
2.26.4
Maintained:
Yes
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable

lumi distribution

versioning

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No versioning.

lumi support

Documentation

Credits

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Publications

Institution(s)

Robert H Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA

Link to literature

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