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LumiWCluster specifications
Information
| Unique identifier | OMICS_18710 |
|---|---|
| Name | LumiWCluster |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS, Windows |
| Programming languages | R |
| Computer skills | Advanced |
| Version | 1.0 |
| Stability | Beta |
| Source code URL | http://www.ams.sunysb.edu/~pfkuan/LumiWCluster/LumiWCluster_1.0.tar.gz |
| Maintained | Yes |
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Versioning
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Documentation
Maintainer
- person_outline Pei Fen Kuan
Publication for LumiWCluster
2010 Bioinformatics
PMCID: 3025715
PMID: 20880956
DOI: 10.1093/bioinformatics/btq553
LumiWCluster citation
library_books
Comprehensive Analysis of DNA Methylation in Head and Neck Squamous Cell Carcinoma Indicates Differences by Survival and Clinicopathologic Characteristics
2013
PLoS One
PMCID: 3554647
PMID: 23358896
DOI: 10.1371/journal.pone.0054742
[…] site in HPV(+) and HPV(−) tumors. The effects of clinical characteristics on DNA CpG methylation measured on the Goldengate array were examined using Limma in R 2.10.1 . Sample weights generated with LumiWCluster based on detection p-values across samples were used in the lmFit function from the Limma package to downweight samples with higher detection p-values. CpG sites were identified as differ […]
LumiWCluster institution(s)
Department of Biostatistics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA
LumiWCluster funding source(s)
Supported by NCI (grants 5-P30-CA16086-34 and 1R21CA134368- 01A1); Susan G. Komen Foundation (grant KG081397).
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