LumiWCluster pipeline

LumiWCluster specifications

Information


Unique identifier OMICS_18710
Name LumiWCluster
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.0
Stability Beta
Source code URL http://www.ams.sunysb.edu/~pfkuan/LumiWCluster/LumiWCluster_1.0.tar.gz
Maintained Yes

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Maintainer


  • person_outline Pei Fen Kuan <>

Publication for LumiWCluster

LumiWCluster IN pipeline

2013
PMCID: 3777004
PMID: 23982603
DOI: 10.1038/bjc.2013.496

[…] x chromosome, and those with a median detection p-value >0.05 across samples can be filtered out; other packages allowing such filtering include (davis et al, 2011; touleimat and tost, 2012)., lumiwcluster (kuan et al, 2010) includes a function for model-based clustering of methylation data using a weighted likelihood approach wherein higher-quality samples (i.e., those with a low median […]

LumiWCluster institution(s)
Department of Biostatistics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA
LumiWCluster funding source(s)
Supported by NCI (grants 5-P30-CA16086-34 and 1R21CA134368- 01A1); Susan G. Komen Foundation (grant KG081397).

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