LumiWCluster statistics

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Citations per year

Number of citations per year for the bioinformatics software tool LumiWCluster
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Tool usage distribution map

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Associated diseases

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LumiWCluster specifications

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Unique identifier OMICS_18710
Name LumiWCluster
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 1.0
Stability Beta
Source code URL http://www.ams.sunysb.edu/~pfkuan/LumiWCluster/LumiWCluster_1.0.tar.gz
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Pei Fen Kuan

Publication for LumiWCluster

LumiWCluster citation

library_books

Comprehensive Analysis of DNA Methylation in Head and Neck Squamous Cell Carcinoma Indicates Differences by Survival and Clinicopathologic Characteristics

2013
PLoS One
PMCID: 3554647
PMID: 23358896
DOI: 10.1371/journal.pone.0054742

[…] site in HPV(+) and HPV(−) tumors. The effects of clinical characteristics on DNA CpG methylation measured on the Goldengate array were examined using Limma in R 2.10.1 . Sample weights generated with LumiWCluster based on detection p-values across samples were used in the lmFit function from the Limma package to downweight samples with higher detection p-values. CpG sites were identified as differ […]


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LumiWCluster institution(s)
Department of Biostatistics, Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC, USA; Department of Biostatistics and Medical Informatics, University of Wisconsin, Madison, WI, USA; Division of Biostatistics, University of Minnesota, Minneapolis, MN, USA
LumiWCluster funding source(s)
Supported by NCI (grants 5-P30-CA16086-34 and 1R21CA134368- 01A1); Susan G. Komen Foundation (grant KG081397).

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