LUMPY specifications

Information


Unique identifier OMICS_04674
Name LUMPY
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


LUMPY article

LUMPY citation

2015
PMCID: 4558871

[…] appropriate genome. next, discordant paired-end and split-end reads were extracted from the bam files using samtools. these reads were then processed using the pairend_distro.py script from the lumpy suite to estimate the library size, mean, and standard deviation. the sample statistics of the library were then prepared as a configuration file with the following lumpy parameters to detect […]

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