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Lypred

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Identifies Bacterial Cell Wall Lyase via pseudo amino acid composition. Lypred can be a powerful and useful tool for the experimental study of bacterial cell wall lyase. An improved pseudo amino acid composition (PseAAC) including g-gap dipeptide compositions and correlation factors of the physicochemical properties was used to extract the characteristics of protein sequences. In jack-knife cross-validation, the average accuracy of 84.82 per cent was achieved.

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Lypred classification

Lypred specifications

Interface:
Web user interface
Input data:
A query protein sequences.
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Input format:
FASTA
Stability:
Stable

Lypred support

Maintainers

  • Hao Lin <>
  • Hui Ding <>
  • Wei Chen <>

Credits

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Publications

Institution(s)

Key Laboratory for Neuro-Information of Ministry of Education, Center of Bioinformatics and Center for Information in Biomedicine, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, China; Department of Pathophysiology, Southwest Medical University, Luzhou, China; School of Computer Science and Technology, Harbin Institute of Technology Shenzhen Graduate School, Shenzhen, Guangdong, China; Department of Physics, School of Sciences, and Center for Genomics and Computational Biology, North China University of Science and Technology, Tangshan, China

Funding source(s)

Supported by the Applied Basic Research Program of Sichuan Province (nos. 2015JY0100 and LZ-LY- 45), the Scientific Research Foundation of the Education Department of Sichuan Province (11ZB122), the Nature Scientific Foundation of Hebei Province (no. C2013209105), the Fundamental Research Funds for the Central Universities of China (nos. ZYGX2015J144 and ZYGX2015Z006), and the Program for the Top Young Innovative Talents of Higher Learning Institutions of Hebei Province (no. BJ2014028).

Link to literature

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