LysAcet specifications

Information


Unique identifier OMICS_03499
Name LysAcet
Interface Web user interface
Restrictions to use None
Input data Protein sequence(s)
Input format FASTA
Computer skills Basic
Stability No
Maintained No

Publication for LysAcet

LysAcet in publications

 (5)
PMCID: 4683166
PMID: 26680990
DOI: 10.1007/s00894-015-2874-z

[…] were netphosk 1.0 [], netphos 2.0 [], kinasephos 2.0 [], diphos [], phosphosvm [], scansite, musite [], and ppsp []. acetylation sites were predicted using pail [], aseb [], brabsb-phka [], lysacet [], and lacep []. methylation sites were predicted using bpb-ppms [] and masa []. ubiquitination sites were predicted using bdm-pub [], cksaap ubsite [], and ubpred []. sumoylation sites […]

PMCID: 4132336
PMID: 25147802
DOI: 10.1155/2014/528650

[…] substrates catalyzed by different localization of specific acetyltransferases []. several computational tools for predicting acetylation sites have been developed, such as netacet [], pail [], lysacet [], and ensemblepail []. however, the characteristic of lysine acetylation between histone and nonhistone proteins is still unclear., in this study, we describe the features and capabilities […]

PMCID: 4139591
PMID: 25056123
DOI: 10.1007/s00894-014-2357-7

[…] gps 2.0 []. additionally, 3d phosphorylation prediction was performed using phos3d []. acetylation sites were predicted using pail [], predmod [], aseb [], plmla [], pskacepred [], brabsb-phka [], lysacet [], and ensemblepail []. methylation sites were predicted using pmes [], bpb-ppms [], plmla [], and cksaap metsite []. sumoylation sites were predicted using sumosp [], sumoplot [], sumohydro […]

PMCID: 4104576
PMID: 25042424
DOI: 10.1038/srep05765

[…] levels., both 5-fold cross-validation and independent tests were conducted to compare the performance of our method with other previously published methods, including phosida, brabsb, plmla, lysacet, ensemblepail and pskacepred. phosida and pskacepred used the binary encoding features of amino acids as input features of the model. brabsb was a svm-based human-specific lysine acetylation […]

PMCID: 2887055
PMID: 20505001
DOI: 10.1093/bioinformatics/btq260

[…] the training set, the predictor generated 78% true positives and 78% true negatives, verifying the expected performance. fig. 1. , we also applied our test set to the svm-based acetylation predictor lysacet (li et al., ) and the clustering-based prediction method predmod (basu et al., ). these predictors achieved true-positive rates of 53 and 25%, and true-negative rates of 52 and 75%, […]


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LysAcet institution(s)
Shanghai Center for Bioinformation Technology, Shanghai, China

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