M-path specifications


Unique identifier OMICS_06412
Name M-path
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for M-path

M-path citations


A review of parameters and heuristics for guiding metabolic pathfinding

J Cheminform
PMCID: 5602787
PMID: 29086092
DOI: 10.1186/s13321-017-0239-6

[…] roperties. For example, excluding highly connected compounds to avoid currency compounds may also exclude compounds that play a significant role in pathways (e.g., pyruvate). Unlike other algorithms, M-path by Araki et al. [] uses hub compounds as a launch point to speed up the search. The approach identifies 139 compounds involved in eight or more reactions as hub compounds and introduces the rea […]


Development of bio based fine chemical production through synthetic bioengineering

Microb Cell Fact
PMCID: 4302092
PMID: 25494636
DOI: 10.1186/s12934-014-0173-5

[…] one can move to pathway design and optimization for microbial production of the target compound. Several computational tools are available, such as BNICE [], FMM [], RetroPath [], and DESHARKY [] and M-path [] for designing de novo metabolic pathways. These resources provide different views of metabolic pathways for microbial production that are generated using the enormous amount of information i […]

M-path institution(s)
Organization of Advanced Science and Technology, Kobe University, Kobe, Department of Chemical Science and Engineering, Graduate School of Engineering, Kobe University, Kobe, Mitsui Knowledge Industry (MKI) Co, Osaka, MCHC R&D Synergy Center, Inc, Yokohama and Mitsubishi Chemical Group Science and Technology Research Center (MCRC) Inc, Yokohama, Japan

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