M-pick statistics

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M-pick specifications

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Unique identifier OMICS_01447
Name M-pick
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for M-pick

M-pick in publication

PMCID: 3998914
PMID: 24763141
DOI: 10.1371/journal.pcbi.1003594

[…] of all non-singleton otus at different clustering thresholds were monophyletic ()., in general, conceptually more sophisticated algorithms to demarcate otus such as ecotype simulation , crop or m-pick may be suited for focused problems, but arguably suffer from throughput problems due to high computational demands (we were not able to execute any of them on our set of one million […]


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M-pick institution(s)
Department of Epidemiology, College of Public Health and Health Professions and College of Medicine, Emerging Pathogens Institute, University of Florida, Gainesville, FL, USA; Department of Electrical and Computer Engineering, University of Florida, Gainesville, FL, USA; Department of Microbiology and Immunology, Center of Excellence in Bioinformatics & Life Sciences, Department of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY, USA
M-pick funding source(s)
This work is supported in part by National Science Foundation under grant No. DBI-1062362.

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