M3D statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

M3D specifications


Unique identifier OMICS_06803
Name M3D
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.14.0
Stability Stable
parallel, BiocGenerics, IRanges, GenomicRanges, testthat, S4Vectors, BiocStyle, SummarizedExperiment, Rcpp, knitr, R(>=3.3.0), BiSeq
Maintained Yes


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Publication for M3D

M3D in publication

PMCID: 5138066
PMID: 27980397
DOI: 10.4137/BBI.S38427

[…] weighted generalized linear model (bsmooth), bump hunting with batch effect removal and peak detection (bumphunting), tunable kernel smoothing (dmr-cate), nonparametric and kernel-based method (m3d), beta-binomial model (methylsig), beta-binomial hierarchical model (moabs), hidden markov model (nhmmfdr), three-state hmm (methpipe), shannon entropy (qdmr), and a binary segmentation algorithm […]

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M3D institution(s)
IANC, School of Informatics, University of Edinburgh, Edinburgh and Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh, UK

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