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MachiBase | A Drosophila melanogaster 5'-end mRNA transcription database

Online

Gives access to Drosophila melanogaster 5’-end mRNA tags at different developmental states. MachiBase is designed to assist fly biologists in their analyses of gene expression and in placing expression data in the context of functional genomics through genomic orientation. Users can access information on differentially expressed genes by either inputting the gene name as a keyword or selecting a chromosomal location. The database can assist biologists in explaining transcriptional initiation mechanisms by combining additional information on chromatin structure and DNA methylation.

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MachiBase forum

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MachiBase classification

  • Animals
    • Drosophila melanogaster

MachiBase specifications

Unique identifier:
OMICS_01878
Community driven:
No
User data submission:
Not allowed
Restrictions to use:
None
Data access:
File download, Browse
Maintained:
Yes

MachiBase support

Maintainer

  • Shinichi Morishita <>

Credits

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Publications

Institution(s)

Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan; Japan Science and Technology Agency (JST), Tokyo, Japan; Department of Molecular Preventive Medicine, School of Medicine, The University of Tokyo, Tokyo, Japan; Department of Biological Sciences, Tokyo Metropolitan University, Hachioji, Japan

Funding source(s)

Supported by Scientific Research on Priority Areas (C) from the Ministry of Education, Culture, Sports, Science and Technology of Japan partially, Bioinformatics Research and Development (BIRD) and the Japan Science and Technology Agency (JST).

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