MacSyFinder specifications

Information


Unique identifier OMICS_20116
Name MacSyFinder
Alternative name Macromolecular System Finder
Interface Application programming interface
Restrictions to use None
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Sophie Abby <>

Information


Unique identifier OMICS_20116
Name MacSyFinder
Alternative name Macromolecular System Finder
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A list of systems defined, protein profiles, command-line parameters and a file with protein sequences.
Input format XML, FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License GNU General Public License version 3.0
Computer skills Advanced
Version 1.0.2
Stability Stable
Requirements Hmmer, makeblastdb
Maintained Yes

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Documentation


Maintainer


  • person_outline Sophie Abby <>

MacSyFinder article

MacSyFinder institution(s)
Microbial Evolutionary Genomics, Institut Pasteur, Paris, France; UMR3525, CNRS, Paris, France; Centre d’Informatique pour la Biologie, Institut Pasteur, Paris, France
MacSyFinder funding source(s)
Supported by the Institut Pasteur, the French ‘‘Centre National de la Recherche Scientifique’’ and the European Research Council (grant EVOMOBILOME, number 281605).

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