Provides an ontology of phenotypic qualities such as properties, attributes of characteristics. PATO is compatible with other ontologies like gene ontologies (GO) or anatomical ontologies to refer to phenotypes. It assigns logical definitions to improve phenotype ontologies by using phenotypic qualities and multiple additional ontologies from the Open Biological Ontologies (OBO) library.
Aims to describe lesions that arise in laboratory mice. MPATH was constructed ab initio by a group of clinical and veterinary pathologists in 2000. It has been used for the MoDIS database to capture and investigate pathology data from a massive aging expriment which has systematically phenotyped 31 of the most important inbred mouse strains.
Permits to characterize the main features of the morphology of bacterial colonies. CMO allows the sharing of current understanding of the variation of colony morphology in microbial infection among domain experts, both clinicians and researchers. The ontology is useful for information retrieval applications, providing vocabulary and taxonomy that can be used for query expansion and semantic searching in this domain.
Provides an ontology for the symbolic representation of the phenotypic structure of the human body. FMA is initially based on the anatomical content of Unified Medical Language System (UMLS). This ontology is organized through four interrelated components: anatomy taxonomy (At), anatomical structural abstraction (ASA), anatomical transformation abstraction (ATA) and metaknowledge (Mk). It includes approximately 75 000 and up to 120 000 terms for over 2.1 million relationship instances.
Allows the curation of C. elegans phenotypes. WPO includes phenotypic data from other nematode species. It contains streamlined version of the ontology that provides a subset of the terms in the whole ontology. The terminology aims to help integration of data from many different sources into a common body of knowledge, and to facilitate data mining and comparisons across species.
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