MaCS pipeline

MaCS specifications

Information


Unique identifier OMICS_12955
Name MaCS
Alternative name Markovian Coalescent Simulator
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 0.5
Stability No
Requirements g++
Source code URL https://codeload.github.com/gchen98/macs/zip/master
Maintained No

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Publication for Markovian Coalescent Simulator

MaCS IN pipeline

2010
PMCID: 2851118
PMID: 20808525
DOI: 10.2174/138920210790218007

[…] genome regions with recombination. genome, for example, simulates the genealogy in a generation-step basis instead of time-to-next-event basis. smc (sequentially markov coalescent) [17] and macs (markovian coalescent simulator) [11] simulate the genealogy beginning with a local tree that is constant for a given region flanked by two successive recombination events. recombination is always […]

MaCS institution(s)
Department of Preventive Medicine, University of Southern California, Los Angeles, CA, USA; Institute for Human Genetics and Department of Epidemiology and Biostatistics, University of California, San Francisco, CA, USA
MaCS funding source(s)
National Institutes of Health, grants HG004049 and R25T CA112355

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