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MacSyView specifications

Information


Unique identifier OMICS_20117
Name MacSyView
Alternative name Macromolecular System Viewer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format JSON
Output format SVG
Operating system Unix/Linux, Mac OS, Windows
Programming languages Javascript
Computer skills Medium
Stability Stable
Maintained Yes

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  • person_outline Sophie Abby <>

Publication for Macromolecular System Viewer

MacSyView in publications

 (2)
PMCID: 5797428
PMID: 29434576
DOI: 10.3389/fmicb.2018.00028

[…] = 10, min_nb_mandatory_genes = 4 for type iv pili) (). macsyfinder was then run with the models and profiles on the genome dataset, and the resulting json files were used for visualization in the macsyview web-browser application (). the svg files generated by macsyview from the predicted operons were downloaded to create figures., ribosomal proteins were identified in genomes using a set […]

PMCID: 4793230
PMID: 26979785
DOI: 10.1038/srep23080

[…] standalone application. the pre-defined models can also be used on the webserver version available at http://mobyle.pasteur.fr/cgi-bin/portal.py#forms::txsscan. the results can be visualized with macsyview. in the standalone application, the users can easily modify the models to change the composition and genetic organisation of the secretion systems. some of these parameters can also […]


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MacSyView institution(s)
Microbial Evolutionary Genomics, Institut Pasteur, Paris, France; UMR3525, CNRS, Paris, France; Centre d’Informatique pour la Biologie, Institut Pasteur, Paris, France
MacSyView funding source(s)
Supported by the Institut Pasteur, the French ‘‘Centre National de la Recherche Scientifique’’ and the European Research Council (grant EVOMOBILOME, number 281605).

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