MADGene specifications

Information


Unique identifier OMICS_15629
Name MADGene
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for MADGene

MADGene in publications

 (12)
PMCID: 5560737
PMID: 28817687
DOI: 10.1371/journal.pone.0183572

[…] m1- or m2-macrophages. this list was generated based on peer-reviewed publications [, , , ] as previously described [, ]. this list was translated into canine orthologous gene symbols by employing madgene (http://cardioserve.nantes.inserm.fr/madtools/madgene/; []) and missing orthologous canine official gene symbols were manually added with the help of the web-based “information hyperlinked […]

PMCID: 5345635
PMID: 27860224
DOI: 10.1111/jcmm.13023

[…] based on the comparatively low amount of functional annotations of canine microarray data , the original canine gene lists were cross‐annotated into orthologous human gene symbols applying madgene (http://cardioserve.nantes.inserm.fr/mad/madgene/) when used as input data for the analyses applying david with the human genome as reference background. for reasons of manageability, […]

PMCID: 5011349
PMID: 27597880
DOI: 10.1186/s13040-016-0106-4

[…] generally, a gene can be represented by more than one probe and extra post-processing step is needed to merge the information and generate networks where nodes truly represent genes. we used madgene [] to map the affymetrix probe ids into hugo gene ids, then for all probes mapped to the same gene, we merged the probes and their connections. if a probe was unmapped it was removed […]

PMCID: 4956304
PMID: 27441688
DOI: 10.1371/journal.pone.0159752

[…] ecm or fibrosis was manually created []. if necessary, previously published murine and human genes, implied in ecm-associated processes were converted into orthologous canine gene symbols using the madgene web tool [] (http://cardioserve.nantes.inserm.fr/madtools/madgene/). furthermore, selected orthologous canine genes were retrieved using information hyperlinked over proteins [] […]

PMCID: 4864272
PMID: 27247850
DOI: 10.1002/brb3.472

[…] was manually created (kreutzer et al. ; paus et al. ). previously published murine and human genes, implied in axonal processes, were converted into orthologous canine gene symbols using the madgene web tool (baron et al. ); http://cardioserve.nantes.inserm.fr/madtools/madgene/. furthermore, selected orthologous canine genes were retrieved using information hyperlinked over proteins […]


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MADGene institution(s)
INSERM U915, IRT-UN, University of Nantes, France; LINA - COD, University of Nantes, France
MADGene funding source(s)
This work was supported in part by the Regional research funding (BIL project) and the French Muscular Dystrophy Association (AFM).

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