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|Alternative name||MicroArray Data Interface for Biological Annotation|
|Interface||Web user interface|
|Restrictions to use||None|
Publication for MicroArray Data Interface for Biological Annotation
Analysis of drought responsive signalling network in two contrasting rice cultivars using transcriptome based approach
[…] enome Browser version 7) highlighted in microarray expression data allowed mining of differentially expressed gene loci underlying the QTLs. The mapping of DEGs on rice chromosome was performed using MicroArray Data Interface for Biological Annotation (MADIBA) (http://madiba.bi.up.ac.za/).To generate the metabolic profile of the differentially expressed genes, the microarray expression data were i […]
In vitro anti plasmodial activity of Dicoma anomala subsp. gerrardii (Asteraceae): identification of its main active constituent, structure activity relationship studies and gene expression profiling
[…] encies were used to calculate relative expression in a mathematical model described by Pfaffl . Gene ontology analyses were performed using the Micro Array Data Interface for Biological Annotation (MADIBA) software . […]
Maize microarray annotation database
[…] reporters with the Maize Microarray Annotation Database can be useful for refining lists of "differentially expressed" reporters for subsequent global analyses (e.g. GO enrichment using tools such as MADIBA ). In addition, the database is also essential to confirm the annotation of candidate genes identified from a microarray experiment before detailed functional analyses (e.g. gene knockouts) a […]
Comparative Transcriptional Profiling and Preliminary Study on Heterosis Mechanism of Super Hybrid Rice
[…] ries, and eight biological process categories (denoted by stars). We further classified DGs at detailed levels based on Gene Ontology (GO) by the Micro Array Data Interface for Biological Annotation (MADIBA) web tool () (Supplemental Tables 3–6). Interestingly, among the 26 significant DG-involved GO terms of cellular component (FDR corrected P-values < 0.05), over 50% were photosynthesis-related, […]
Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?
[…] nect the biological space with the chemical space, following the "reverse chemical genetic" way, i.e. "from known drugs to biological response" (toxicity, mode of action). Basic analytical tools like MADIBA and sophisticated mining approaches will be needed to understand and compare the biological responses to anti-malarial drugs. The other door to connect the biological space and the chemical spa […]
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