MADMAX statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool MADMAX
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left LIMS chevron_right
Want to access the full stats & trends on this tool?

Protocols

MADMAX specifications

Information


Unique identifier OMICS_01006
Name MADMAX
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Database management system Oracle
Computer skills Advanced
Stability Stable
Maintained No

Versioning


No version available

Publication for MADMAX

MADMAX citations

 (29)
library_books

The acute effects on duodenal gene expression in healthy men following consumption of a low fat meal enriched with theobromine or fat

2018
Sci Rep
PMCID: 5785967
PMID: 29374228
DOI: 10.1038/s41598-018-20068-y

[…] e Transcript Sense Target Assay and hybridized to human whole-genome Affymetrix Gene 1.1 ST arrays targeting 19697 unique genes (Affymetrix, Santa Clara, CA). Microarray analyses were performed using MADMAX pipeline for statistical analysis of microarray data. In short, microarrays were normalized with the robust multichip average method and probes were annotated as described,. This gene set was f […]

library_books

Plasticity of lifelong calorie‐restricted C57BL/6J mice in adapting to a medium‐fat diet intervention at old age

2017
Aging Cell
PMCID: 5847878
PMID: 29266667
DOI: 10.1111/acel.12696

[…] dix  for details). Hybridization, washing, and scanning of Affymetrix GeneChip Mouse Gene 1.1 ST arrays were performed according to standard Affymetrix protocols. Microarray analysis was performed in MADMAX, a pipeline for statistical analysis of microarray data (Lin et al., ). Arrays were normalized using the Robust Multiarray Average method (Bolstad, Irizarry, Åstrand, & Speed, ; Irizarry et al. […]

library_books

Altered gene expression profiles in the lungs of benzo[a]pyrene exposed mice in the presence of lipopolysaccharide induced pulmonary inflammation☆

2017
Toxicol Appl Pharmacol
PMCID: 5703654
PMID: 28987381
DOI: 10.1016/j.taap.2017.09.023

[…] Microarray analysis was performed using the MADMAX pipeline for statistical analysis of microarray data (). Briefly, microarrays were normalized with the robust multichip average method and probes were annotated according to Dai et al. (, ). In […]

library_books

Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo

2017
PMCID: 5687563
PMID: 29116234
DOI: 10.1038/s41477-017-0035-3

[…] dopsis Gene 1.1 ST 24-array plates (atlas) or single array strips (nuclear vs. cellular RNA) (Affymetrix, CA, USA) according to the manufacturers protocol. Microarray analysis was performed using the MADMAX pipeline and a custom CDF file (MBNI CustomCDF version 19.0.0). Here, all expression values were (quantile) normalised by the Robust multi-array average algorithm (RMA) using the median polish […]

library_books

Experimental preeclampsia in rats affects vascular gene expression patterns

2017
Sci Rep
PMCID: 5665945
PMID: 29093568
DOI: 10.1038/s41598-017-14926-4

[…] Microarray analysis was performed using MADMAX pipeline for statistical analysis of microarray data. Quality control was performed and all arrays met our criteria. For further analysis a custom annotation was used based on reorganized oligo […]

library_books

Lactobacillus plantarum Strains Can Enhance Human Mucosal and Systemic Immunity and Prevent Non steroidal Anti inflammatory Drug Induced Reduction in T Regulatory Cells

2017
Front Immunol
PMCID: 5572349
PMID: 28878772
DOI: 10.3389/fimmu.2017.01000

[…] Microarray analysis was performed utilizing MADMAX for statistical analysis (). All arrays met the quality criteria. The probes on the Human Gene 1.1 ST arrays were redefined according to Dai et al. () based on the NCBI Entrez database (CDF ver […]


Want to access the full list of citations?
MADMAX institution(s)
Laboratory of Bioinformatics, AN Wageningen, Netherlands; Laboratory of Plant Breeding, Wageningen, Netherlands; RIKILT, Wageningen, Netherlands; Nutrition, Metabolism and Genomics Group, Wageningen, Netherlands; Netherlands Bioinformatics Centre (NBIC), Nijmegen, Netherlands; Institute of Vegetable and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China

MADMAX reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MADMAX