MADMAX statistics
Tool stats & trends
Looking to identify usage trends or leading experts?
Protocols
MADMAX specifications
Information
| Unique identifier | OMICS_01006 |
|---|---|
| Name | MADMAX |
| Software type | Toolkit/Suite |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux |
| Database management system | Oracle |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | No |
Versioning
No version available
Publication for MADMAX
MADMAX citations
(29)The acute effects on duodenal gene expression in healthy men following consumption of a low fat meal enriched with theobromine or fat
[…] e Transcript Sense Target Assay and hybridized to human whole-genome Affymetrix Gene 1.1 ST arrays targeting 19697 unique genes (Affymetrix, Santa Clara, CA). Microarray analyses were performed using MADMAX pipeline for statistical analysis of microarray data. In short, microarrays were normalized with the robust multichip average method and probes were annotated as described,. This gene set was f […]
Plasticity of lifelong calorie‐restricted C57BL/6J mice in adapting to a medium‐fat diet intervention at old age
[…] dix for details). Hybridization, washing, and scanning of Affymetrix GeneChip Mouse Gene 1.1 ST arrays were performed according to standard Affymetrix protocols. Microarray analysis was performed in MADMAX, a pipeline for statistical analysis of microarray data (Lin et al., ). Arrays were normalized using the Robust Multiarray Average method (Bolstad, Irizarry, Åstrand, & Speed, ; Irizarry et al. […]
Altered gene expression profiles in the lungs of benzo[a]pyrene exposed mice in the presence of lipopolysaccharide induced pulmonary inflammation☆
[…] Microarray analysis was performed using the MADMAX pipeline for statistical analysis of microarray data (). Briefly, microarrays were normalized with the robust multichip average method and probes were annotated according to Dai et al. (, ). In […]
Transcriptome dynamics revealed by a gene expression atlas of the early Arabidopsis embryo
[…] dopsis Gene 1.1 ST 24-array plates (atlas) or single array strips (nuclear vs. cellular RNA) (Affymetrix, CA, USA) according to the manufacturers protocol. Microarray analysis was performed using the MADMAX pipeline and a custom CDF file (MBNI CustomCDF version 19.0.0). Here, all expression values were (quantile) normalised by the Robust multi-array average algorithm (RMA) using the median polish […]
Experimental preeclampsia in rats affects vascular gene expression patterns
[…] Microarray analysis was performed using MADMAX pipeline for statistical analysis of microarray data. Quality control was performed and all arrays met our criteria. For further analysis a custom annotation was used based on reorganized oligo […]
Lactobacillus plantarum Strains Can Enhance Human Mucosal and Systemic Immunity and Prevent Non steroidal Anti inflammatory Drug Induced Reduction in T Regulatory Cells
[…] Microarray analysis was performed utilizing MADMAX for statistical analysis (). All arrays met the quality criteria. The probes on the Human Gene 1.1 ST arrays were redefined according to Dai et al. () based on the NCBI Entrez database (CDF ver […]
Citations
Looking to check out a full list of citations?
MADMAX reviews
Be the first to review MADMAX
