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Popular tool citations

chevron_left Metabolic network analysis Differential expression detection Data analysis Signaling pathways chevron_right
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MADNet specifications

Information


Unique identifier OMICS_24544
Name MADNet
Interface Web user interface
Restrictions to use None
Input data User’s normalized differential expression data file, containing two columns with gene identifier and differential expression value (fold change) and, optionally, a third column with P-values (i.e. statistical significance of corresponding gene-expression values).
Input format CSV,TSV
Computer skills Basic
Stability No
Maintained No

Maintainer


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Publication for MADNet

MADNet citation

library_books

Demosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans

2010
Mol Biol Evol
PMCID: 2981516
PMID: 20621960
DOI: 10.1093/molbev/msq174

[…] was performed by running a pairwise sequence search against the kegg-curated set of human proteins () and mapping the percent identity of the alignment to kegg metabolic and signaling pathways with madnet ()., we successfully classified 3,077 (66%) s. domuncula and 814 (61%) l. baicalensis transcripts using the string database () and a stringent assignment process (discussed in the methods […]


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MADNet institution(s)
Bioinformatics Group, Division of Biology, Faculty of Science, Zagreb University, Zagreb, Croatia
MADNet funding source(s)
Supported by the EMBO Young Investigator Program (Installation grant 1431/2006) and Croatian MSES grant 119-0982913-1211.

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