MADS+ specifications


Unique identifier OMICS_07629
Name MADS+
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Biological technology Affymetrix
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


No version available

Publication for MADS+

MADS+ citations


The RNA Binding Protein RBM38 (RNPC1) Regulates Splicing during Late Erythroid Differentiation

PLoS One
PMCID: 3820963
PMID: 24250749
DOI: 10.1371/journal.pone.0078031

[…] NA,and hybridization was carried out as described previously []. The CEL file data sets can be accessed at NCBI GEO repository through accession number GSE49293. Data analysis was performed using the MADS+ computational pipeline to detect differential splicing events from the Affymetrix exon junction array data []. For each alternative splicing event, MADS+ evaluates the signals of probes targetin […]


Posttranscriptional regulation by RNA binding proteins during epithelial to mesenchymal transition

PMCID: 3827902
PMID: 23715860
DOI: 10.1007/s00018-013-1379-0

[…] icing profiles after ectopic overexpression of ESRP1 in MDA-MB231 mesenchymal cells and after knockdown of ESRP1 and ESRP2 in PNT2 epithelial cells. Microarray analysis of differential splicing plus (MADS+) computational pipeline was used to identify ESRP-regulated changes in splicing. HJAY arrays consist of eight tiled probes per probe set that target 315,137 exons and 260,488 exon–exon junctions […]

MADS+ institution(s)
Department of Biostatistics, University of Iowa, Iowa City, IA, USA

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