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MAFFT

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Allows alignment of multiple sequences. MAFFT provides a range of different methods such as L-INS-I or FFT-NS-2. It permits to add unaligned sequences into an existing alignment. This tool can proceed to adjustment of direction in nucleotide alignment, constrained alignment and parallel processing. It employs the iterative refinement technique for calculation of progressive alignment.

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1 user review

1 user review

Sayoni Das's avatar image Sayoni Das's country flag

Sayoni Das

Very efficient, well-documented and easy to use MSA tool

MAFFT forum

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MAFFT classification

MAFFT specifications

Interface:
Web user interface
Input data:
Some protein or DNA sequences.
Computer skills:
Basic
Stability:
Stable
Restrictions to use:
None
Input format:
FASTA
Version:
7.0
Maintained:
Yes

MAFFT distribution

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0 user reviews

0 user reviews

No review has been posted.

MAFFT forum

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No open topic.

MAFFT classification

MAFFT specifications

Software type:
Application/Script
Restrictions to use:
None
Input format:
FASTA
License:
BSD 3-clause “New” or “Revised” License, GNU General Public License version 3.0
Version:
7.310
Source code URL:
https://mafft.cbrc.jp/alignment/software/source.html
Interface:
Command line interface
Input data:
Some protein or DNA sequences.
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

MAFFT distribution

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No versioning.

MAFFT support

Documentation

Maintainer

  • Kazutaka Katoh <>
  • Kazutaka Katoh <>

Credits

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Publications

Institution(s)

Graduate School of Information Sciences, Tohoku University, Sendai, Japan; Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan; Biotechnology Research Institute for Drug Discovery, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan; Immunology Frontier Research Center, Osaka University, Suita, Japan

Funding source(s)

Supported by the Platform Project for Supporting in Drug Discovery and Life Science Research (Platform for Drug Discovery, Informatics, and Structural Life Science) from Japan Agency for Medical Research and Development (AMED), and JSPS KAKENHI Grant Number 16K07464.

Link to literature

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