mag_distortion_estimate statistics

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mag_distortion_estimate specifications

Information


Unique identifier OMICS_26906
Name mag_distortion_estimate
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A set of images of polycrystalline gold and an estimate of the pixel size.
Input format MRC/CCP4
Output data Some estimated anisotropic magnification parameters.
Operating system Unix/Linux
Programming languages Fortran
License Janelia Farm Research Campus Software Copyright 1.1
Computer skills Advanced
Version 1.0.1
Stability Stable
Maintained Yes

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  • person_outline Nikolaus Grigorieff <>

Publication for mag_distortion_estimate

mag_distortion_estimate in publications

 (5)
PMCID: 5799190
PMID: 29403017
DOI: 10.1038/s41598-018-20107-8

[…] the best possible data quality. 2,107 micrographs showing thon rings beyond 3.5 å were used. the drifts of movie frames were corrected using motioncor2. magnification anisotropy was corrected with mag_distortion_estimate and mag_distortion_correct. ctffind4 was used to determine the contrast transfer function., subsequently, a total of 268,364 particles were extracted and subjected […]

PMCID: 5657493
PMID: 28538735
DOI: 10.1038/nature22397

[…] follows. videos were processed using imod to decompress frames and apply the gain reference. videos were drift-corrected using unblur. magnification anisotropy of the video sums was corrected with mag_distortion_estimate and mag_distortion_correct. ctffind3 was used to determine defocus values. particles were automatically picked from 10×-binned images using signature with a ribosome reference […]

PMCID: 5655137
PMID: 29027901
DOI: 10.7554/eLife.28560.031

[…] using imod (rrid:scr_003297) () to decompress frames and apply the gain reference. movies were drift-corrected using unblur (). magnification anisotropy of the movie sums was corrected with mag_distortion_estimate and mag_distortion_correct (). ctffind4 () was used to determine defocus values. 416 movies of 30s•rnap complex (199 movies of 30sδs1•rnap complex) with high drift, low […]

PMCID: 4974054
PMID: 27434674
DOI: 10.7554/eLife.17029.043

[…] using imod () to decompress frames and apply the gain reference. movies were drift-corrected and exposure-filtered using unblur (). magnification anisotropy of the movie sums was corrected with mag_distortion_estimate and mag_distortion_correct (). ctffind3 () was used to determine defocus values. 2233 movies from the first dataset and 207 movies from the second dataset with high drift, low […]

PMCID: 4718723
PMID: 26439008
DOI: 10.7554/eLife.10180.049

[…] collection was automated with serialem ()., magnification anisotropy () under the conditions described above was measured previously from images of a standard cross-grating specimen with the program mag_distortion_estimate (). the linear scaling parameters were 0.986 and 1.013, the azimuth of the distortion was 134.0°, and the program mag_distortion_correct was used to correct […]


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mag_distortion_estimate institution(s)
Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA

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