MAGE-STK statistics

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MAGE-STK specifications


Unique identifier OMICS_27709
Software type Toolkit/Suite
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C#, Java, Perl, Python
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Paul Spellman <>

Publication for MAGE-STK

MAGE-STK in publication

PMCID: 2762057
PMID: 19828068
DOI: 10.1186/1471-2105-10-S12-I1

[…] then defined. formats are specified as spreadsheets (mage-tab) and as an xml language (mage-ml). in addition, the mged ontology was developed for the description of key concepts. a software toolkit (mage-stk) was finally developed to facilitate the adoption of mage-om and mage-ml., along these lines, many 'minimum information' datasets have been defined in other biological domains. currently, […]

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MAGE-STK institution(s)
Department of Cell and Molecular Biology, University of California at Berkeley, Berkeley, CA, USA; Rosetta Biosoftware, Kirkland, WA, USA; Open Informatics, Albuquerque, NM, USA; Bioscience Research - Agilent Technologies, Palo Alto, CA, USA; European Bioinformatics Institute, EMBL Hinxton Outstation, Cambridge, UK; Affymetrix, Inc., Emeryville, CA, USA; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA; Molecular Mining Corporation, Kingston, ON, Canada; Imaging Research Inc., St. Catharines, ON, Canada; Iobion Informatics LLC, La Jolla, CA, USA; LION bioscience Inc., San Diego, CA, USA; Center for Bioinformatics, University of Pennsylvania, Philadelphia, PA, USA; The Institute for Genomic Research, Rockville, MD, USA; Computational Biology, Institute for Systems Biology, Seattle, WA, USA; CHRF, University of Cincinnati College of Medicine, Cincinnati, OH, USA
MAGE-STK funding source(s)
Supported by grant DE-FG02-00ER62893 from the DOE and an NSF biocomputing post-doctoral fellowship.

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