MAGI specifications

Information


Unique identifier OMICS_22790
Name MAGI
Alternative name Metabolite, Annotation, and Gene Integration
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A metabolite identification file of LCMS features and a protein or gene sequence.
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Ben Bowen <>
  • person_outline Trent Northen <>

Information


Unique identifier OMICS_22790
Name MAGI
Alternative name Metabolite, Annotation, and Gene Integration
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input data A metabolite identification file of LCMS features and a protein or gene sequence.
Input format FASTA
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Ben Bowen <>
  • person_outline Trent Northen <>

Publication for Metabolite, Annotation, and Gene Integration

MAGI institution(s)
Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Data Analytics and Visualization Group, Computational Research Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA; National Energy Research Scientific Computing Center, Lawrence Berkeley National Laborator, Berkeley, CA, USA
MAGI funding source(s)
Supported by the U.S. Department of Energy Office of Science by the Ecosystems and Networks Integrated with Genes and Molecular Assemblies (ENIGMA) Program, the U.S. Department of Energy Joint Genome Institute (JGI), and the National Energy Research Scientific Computing Center (NERSC) – a DOE Office of Science User Facility – all under Contract No. DE-AC02-05CH11231.

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