Magia protocols

Magia specifications

Information


Unique identifier OMICS_05979
Name Magia
Alternative name MAGIA2
Interface Web user interface
Restrictions to use None
Input data Some miRNA and gene (or transcript) expression data.
Input format TSV
Output data Some interactive images and dynamic tables.
Output format TSV
Computer skills Basic
Version 2.0
Stability Stable
Maintained Yes

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus
    • Rattus norvegicus

Maintainers


  • person_outline Chiara Romualdi <>
  • person_outline Stefania Bortoluzzi <>

Additional information


http://gencomp.bio.unipd.it/magia2/documentation/?sid=b06db08d8c69e448314c7967ef1c014a

Publications for Magia

Magia IN pipelines

 (2)
2018
PMCID: 5776778
PMID: 29357938
DOI: 10.1186/s12958-017-0319-5

[…] sample. degseq (v1.18.0) [33] was used to analyze differentially expressed genes (degs) with parameters of fdr < 0.05 and |log2fc| ≥ 1., the mirna and mrna expression profiles were analyzed by magia2 (http://gencomp.bio.unipd.it/magia2/) to identify mirna-tf-gene binary interactions and circuits [37]. the mirna-target interactions were predicted by the targetscan database [38] […]

2012
PMCID: 3276573
PMID: 22347458
DOI: 10.1371/journal.pone.0031293

[…] it used mirnas sequences downloaded from mirbase version 14. to identify the most likely targets, we have integrated mrna and mirna expression data, obtained on the same biological samples, using magia web tool [60]. we used a non-parametric index (spearman correlation coefficient), the most indicated statistical coefficient for a small number of measures, to estimate the degree […]

Magia institution(s)
Department of Biology, University of Padova, Padova, Italy; Department of Statistical Science, University of Padova, Padova, Italy; Department of Comparative Biomedicine and Food Sciences, University of Padova, Padova, Italy

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