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MagicViewer | Integrated solution for NGS data visualization and genetic variation detection and annotation

Easily visualizes short read mapping, identify and annotate genetic variation based on the reference genome. MagicViewer provides a user-friendly environment in which large-scale short reads can be displayed in a zoomable interface under user-defined color scheme through an operating system-independent manner. Meanwhile, it also holds a versatile computational pipeline for genetic variation detection, filtration, annotation and visualization, providing details of search option, functional classification, subset selection, sequence association and primer design. In conclusion, MagicViewer is a sophisticated assembly visualization and genetic variation annotation tool for next-generation sequencing data, which can be widely used in a variety of sequencing-based researches, including genome re-sequencing and transcriptome studies.

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The download link at the site (http://bioinformatics.zj.cn/magicviewer/) is no longer valid

MagicViewer forum

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MagicViewer classification

MagicViewer specifications

Unique identifier:
OMICS_00887
Interface:
Graphical user interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Computer skills:
Medium
Maintained:
Yes

MagicViewer distribution

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No versioning.

MagicViewer support

Maintainer

  • Zhongsheng Sun <>

Credits

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Publications

Institution(s)

Institute of Genomic Medicine, Wenzhou Medical College, Wenzhou, China; Center for Comparative Genomics and Bioinformatics, Department of Biochemistry and Molecular Biology, Pennsylvania State University, PA, USA; School of Pharmaceutical Science/Zhejiang Provincial Key Laboratory of Biotechnology Pharmaceutical Engineering, Wenzhou Medical College, Wenzhou; Behavioral Genetics Center, Institute of Psychology, Chinese Academy of Science, Beijing, China

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