Magnolya protocols

Magnolya specifications

Information


Unique identifier OMICS_00347
Name Magnolya
Alternative name matched genomes de novo assembly graph analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.15
Stability Stable
Maintained Yes

Download


Versioning


Add your version

Documentation


Maintainer


  • person_outline Dick de Ridder <>

Publication for matched genomes de novo assembly graph analysis

Magnolya IN pipeline

2017
PMCID: 5388867
PMID: 28401919
DOI: 10.1038/srep46155

[…] single-nucleotide differences were inspected with the integrated genomics viewer67 (igv). the chromosomal copy number variance (cnv) was estimated using the poisson mixture model based algorithm magnolya68. the copy number of xyla was estimated by comparing the read depth to the average read depth of all chromosomes. raw sequence data of strains imx696, ims0488 and ims0489 are deposited […]

Magnolya institution(s)
The Delft Bioinformatics Lab, Department of Intelligent Systems, Delft University of Technology, Delft, The Netherlands; Department of Biotechnology, Delft University of Technology, Delft, The Netherlands; Kluyver Centre for Genomics of Industrial Fermentation, Delft, The Netherlands; Heineken Supply Chain, Global Research & Development, Zoeterwoude, The Netherlands; Netherlands Bioinformatics Centre, Nijmegen, The Netherlands
Magnolya funding source(s)
Supported by the Kluyver Centre for Genomics of Industrial Fermentation, and the Netherlands Genomics Initiative.

Magnolya reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Magnolya