Protocols

MaGuS specifications

Information


Unique identifier OMICS_10885
Name MaGuS
Alternative name Map-Guided Scaffolding
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
License CeCILL version 2.1
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Mohammed-Amin Madoui

Publication for Map-Guided Scaffolding

MaGuS citation

call_split

MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data

2016
BMC Bioinformatics
PMCID: 4776351
PMID: 26936254
DOI: 10.1186/s12859-016-0969-x
call_split See protocol

[…] AnA50 (50 % of the total assembly contains collinear segments with length over AnA50 bp), and AnG50 (50 % of the estimated genome size contains collinear anchored segments with length over AnG50 bp). MaGuS also generates Anx, AnAx, and AnGx graphs (based on the Nx graph []) that is a plot of the metrics for x values ranging from 1 to 100 %. […]

MaGuS institution(s)
CEA, DSV, Institut de Génomique, Genoscope, Evry, France
MaGuS funding source(s)
This work was supported by Genoscope (Évry, France), the Commissariat à l’Energie Atomique et aux Energies Alternatives (CEA), France Génomique (ANR-10-INBS-09-08), and KeyGene NV.

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