MAIT statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MAIT
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Tool usage distribution map

This map represents all the scientific publications referring to MAIT per scientific context
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Associated diseases

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Popular tool citations

chevron_left Metabolite identification Chromatogram alignment Peak detection Statistical analysis Data imputation Spectral visualization chevron_right
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Protocols

MAIT specifications

Information


Unique identifier OMICS_03448
Name MAIT
Alternative name Metabolite Automatic Identification Toolkit
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data LC/MS Metabolomic Data
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.8.0
Stability Stable
Requirements
CAMERA, Rcpp, pls
Maintained Yes

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Documentation


Publication for Metabolite Automatic Identification Toolkit

MAIT citations

 (3)
library_books

Navigating freely available software tools for metabolomics analysis

2017
Metabolomics
PMCID: 5550549
PMID: 28890673
DOI: 10.1007/s11306-017-1242-7

[…] nificant differences between datasets. Peaks are picked, smoothed and grouped, followed by retention time alignment. Peak quality scores are reported to enable to user to identify high quality peaks. Metabolite Automatic Identification Toolkit (MAIT) (Fernández-Albert et al. ) provides a wrapper of XCMS (Smith et al. ) and CAMERA (Kuhl et al. ) for user-friendly LC–MS data analysis. Additionally s […]

library_books

From chromatogram to analyte to metabolite. How to pick horses for courses from the massive web resources for mass spectral plant metabolomics

2017
GigaScience
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] ipin Biomarker Screening Through Adduct Hierarchy Sequences; m/z: mass-to-charge ratio; MaConDa: Mass Spectrometry Contaminant Database; MAGMa: MS Annotation Based on In Silico Generated Metabolites; MAIT: Metabolite Automatic Identification Toolkit; MarVis-Suite: Marker Visualization Suite; MathDAMP: Mathematica Package for Differential Analysis of Metabolite Profiles; MAVEN: Metabolomic Analysis […]

call_split

Bioactivity in Rhododendron: A Systemic Analysis of Antimicrobial and Cytotoxic Activities and Their Phylogenetic and Phytochemical Origins

2017
Front Plant Sci
PMCID: 5390042
PMID: 28450876
DOI: 10.3389/fpls.2017.00551
call_split See protocol

[…] ion mode.Analyses of HPLC-TOF-MS raw data, in terms of peak detection, peak matching, and retention time alignment, were performed using the R packages XCMS (Smith et al., ; Tautenhahn et al., ) and MAIT (Fernandez-Albert et al., ). For determination of the involved parameter the toolbox IPO has been used (Libiseller et al., ). In the course of peak annotation, the intensity threshold was set to […]


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MAIT institution(s)
B2SLab., Department d'Enginyeria de Sistemes, Automàtica i Informàtica Industrial, Universitat Politècnica de Catalunya, Barcelona, Spain; Biomarkers & Nutrimetabolomic Lab., Department of Nutrition and Food Science-XaRTA, INSA, Faculty of Pharmacy, Food and Nutrition Torribera Campus, University of Barcelona, Santa Coloma de Gramenet, Spain; INGENIO-CONSOLIDER Program, FUN-C-Food, Barcelona, Spain
MAIT funding source(s)
This project was funded by the Spanish national (grants AGL2009-13906-C02-01/ALI and AGL2010-10084-E), the CONSOLIDER INGENIO 2010 Programme, FUN-C-FOOD (CSD2007-063) from the MICINN and Merck Serono 2010 Research Grants (Fundación Salud 2000), the Spanish Ministerio de Ciencia y Tecnología through TEC2010-20886-C02-02 and TEC2010-20886-C02-01, the 2009SGR-1395 consolidated research group of the Generalitat de Catalunya, Spain.

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