MaizeCyc statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

MaizeCyc specifications

Information


Unique identifier OMICS_02713
Name MaizeCyc
Restrictions to use None
Version 2.1
Maintained Yes

Taxon


  • Plants and Fungi
    • Zea mays

Publications for MaizeCyc

MaizeCyc citations

 (8)
library_books

SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases

2018
PMCID: 5946812
PMID: 29762652
DOI: 10.1093/database/bay035

[…] s [Bos taurus in CattleCyc ()] and plants such as Arabidopsis thaliana in AraCyc (, ), Medicago truncatula in MedicCyc (), Fragaria vesca in FragariaCyc (), Oryza sativa in RiceCyc () and Zea mays in MaizeCyc (). While most PGDBs are created at the species level, this is not required and they can be generated at arbitrary levels in the taxonomic hierarchy. For instance, PlantCyc is a kingdom-level […]

call_split

Comparative Histological and Transcriptional Analysis of Maize Kernels Infected with Aspergillus flavus and Fusarium verticillioides

2017
Front Plant Sci
PMCID: 5723656
PMID: 29270183
DOI: 10.3389/fpls.2017.02075
call_split See protocol

[…] GePedia, Maize Protein Atlas databases (; ; ; ; ) and the R-like gene database published by . Differentially expressed maize genes were also placed into biosynthetic and regulatory pathways using the MaizeCyc database and the bioinformatics software Biocyc (). Clustering was performed using JMP, 11 (SAS Institute Inc., Cary, NC, United States). […]

call_split

Genome wide trait trait dynamics correlation study dissects the gene regulation pattern in maize kernels

2017
BMC Plant Biol
PMCID: 5644097
PMID: 29037150
DOI: 10.1186/s12870-017-1119-y
call_split See protocol

[…] To more fully explore the functions of candidate genes, the annotation resources of maizeGDB (http://maizecyc.maizegdb.org) and the InterPro (http://www.ebi.ac.uk/interpro/) database were integrated into the analyses [, ]. GO enrichment analyses were performed using the agriGO tool (http://systemsbio […]

library_books

The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize

2016
BMC Syst Biol
PMCID: 5129634
PMID: 27899149
DOI: 10.1186/s12918-016-0369-x

[…] www.plantcyc.org) was developed using the Ensemble Enzyme Prediction Pipeline (E2P2 v2.0) [] created by Plant Metabolic Network (PMN) [] in collaboration with MaizeGDB (http://www.maizegdb.org) [, ]. MaizeCyc 2.2 [] was developed based on the Ensembl XRef pipeline [, ] in collaboration between two database projects, Gramene (http://www.gramene.org) and MaizeGDB. The term “Ensemble” in the CornCyc […]

library_books

Expression of OsMYB55 in maize activates stress responsive genes and enhances heat and drought tolerance

2016
BMC Genomics
PMCID: 4850646
PMID: 27129581
DOI: 10.1186/s12864-016-2659-5

[…] od to calculate a FDR. FDRs less than 0.05 were considered significant. GOseq and the same methodology for GO Term enrichment was used to identify enriched pathways and pathways names were taken from MaizeCyc version 2.0.1. In this case, FDRs less than 0.1 were considered significant in order to capture more pathways. […]

library_books

Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance

2015
PLoS One
PMCID: 4475072
PMID: 26090679
DOI: 10.1371/journal.pone.0126185

[…] rence Sequence) [], UniProt [], InterPro [], UniGene [, ] and Carbohydrate-Active enZYmes (CAZY) [] were queried for any gene and/or protein with maize chitinolytic activity or sequence homology. The MaizeCyc database [] was also searched for any gene member with chitinase activity (GO:0004568), chitin catabolic activity (GO:0006032), and/or chitin binding (GO:0008061) (). In addition, a literatur […]

Citations

Looking to check out a full list of citations?

MaizeCyc institution(s)
USDA-ARS Plant Genetics Research Unit and Division of Plant Sciences, Department of Agronomy, University of Missouri, Columbia, MO, USA; USDA-ARS Plant Gene Expression Center, Albany, CA, USA; Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA; Department of Plant Sciences, University of Arizona, Tucson, AZ, USA; Development and Cell Biology, Department of Genetics, Iowa State University, IA, USA; USDA-ARS Corn Insects and Crop Genetics Research Unit, Ames, IA, USA

MaizeCyc reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MaizeCyc