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|Interface||Command line interface|
|Restrictions to use||None|
|Biological technology||Life Technologies|
No version available
- person_outline Serghei Mangul
Publication for MaLTA
An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA Seq
[…] f gene quantification method. One is alignment-based, calculating from transcriptome alignment results such as RSEM , BitSeq , eXpress , IsoEM and its variation tailor-made for Ion Torrent Data MaLTA-IsoEM [, ] or genome alignment results such as Cufflinks/Cuffdiff , HTseq  and MISO ; it is also important to differentiate count-based methods (e.g., HTseq ) and methods that first esti […]
Transcriptome analysis of Brassica napus pod using RNA Seq and identification of lipid related candidate genes
[…] sample. In addition to Cufflinks, there are several other softwares such as IsoEM that can be used to infer isoform and gene expression levels from high-throughput transcriptome sequencing [, ], and MaLTA  that can be used to transcriptome assembly and quantification from Ion Torrent RNA-Seq data.The Brassica napus genome annotation downloaded from the NCBI database was merged with the annotati […]
Seagrass meadows (Posidonia oceanica) distribution and trajectories of change
[…] e, but P. oceanica was found to be absent in the eastern part of the Mediterranean basin (Syria, Lebanon, Israel and part of the Egyptian coasts, except for the Nile’s delta). Data were available for Malta and some sites along the coasts of the Dardanelles Strait, islands of the Central Marmara Sea and Cyprus. In the southern part of the Mediterranean basin, P. oceanica distribution was poorly doc […]
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