MaM statistics

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Citations per year

Number of citations per year for the bioinformatics software tool MaM

Tool usage distribution map

This map represents all the scientific publications referring to MaM per scientific context
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Associated diseases


Popular tool citations

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MaM specifications


Unique identifier OMICS_24483
Name MaM
Alternative names Multiple Alignment Manipulator, webMaM
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input format Clustal,NEXUS,MEGA,FASTA
Output format Clustal,NEXUS,MEGA,FASTA
Operating system Unix/Linux
Programming languages C
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 1.4-2
Stability Beta
Maintained Yes


No version available



  • person_outline Can Alkan

Publication for Multiple Alignment Manipulator

MaM citation


Genomic divergences among cattle, dog and human estimated from large scale alignments of genomic sequences

BMC Genomics
PMCID: 1525190
PMID: 16759380
DOI: 10.1186/1471-2164-7-140

[…] tandard deviations. Insertion/deletion events were not factored into these calculations []. Coding, UTR, unique noncoding and repetitive regions from the sequence alignments were extracted using MaM (Multiple Alignment Manipulator) [,]. Repeat coordinates were identified using the slow option of RepeatMasker v3.0.5 with an updated RepBase library for cattle. Five major classes of repeats were cons […]

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MaM institution(s)
Department of EECS, Case Western Reserve University, Cleveland, OH, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA; Institute of Human Genetics, Montpellier, France; Methodes et Algorithmes pour la Bioinformatique, LIRMM, CNRS UMR 2506, Montpellier, France; Department of Genetics, Case Western Reserve University, Cleveland, OH, USA; Department of Computing Science, SFU, Burnaby, BC, Canada
MaM funding source(s)
Supported in part by grants from Charles Wang Foundation and the Ohio Board of Regents and the CNRS ACI IMPBio.

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