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Protocols

MaMuT specifications

Information


Unique identifier OMICS_33157
Name MaMuT
Alternative name Massive Multi-view Tracker
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU General Public License version 3.0
Computer skills Medium
Version 0.27.0
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Pavel Tomančák
  • person_outline Carsten Wolff

Publication for Massive Multi-view Tracker

MaMuT citations

 (7)
library_books

Multi view light sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

2018
eLife
PMCID: 5929908
PMID: 29595475
DOI: 10.7554/eLife.34410.031

[…] To examine the cellular basis of morphogenesis, we developed a novel Fiji plugin to extract cell lineages from multi-view and multi-terabyte datasets. This tool was dubbed MaMuT for Massive Multi-view Tracker () and is a hybrid and extension of two existing Fiji plugins: the BigDataViewer visualization engine () and the TrackMate annotation engine (). MaMuT can be insta […]

call_split

Cleavage modification did not alter blastomere fates during bryozoan evolution

2017
BMC Biol
PMCID: 5408385
PMID: 28454545
DOI: 10.1186/s12915-017-0371-9
call_split See protocol

[…] for this purpose and available at https://github.com/nelas/simi.py. To conduct further analyses and visualization of the data, we used simi.py to convert the data from Simi BioCell into the format of MaMuT (Massive Multi-view Tracker) [], a cell lineage tracker integrated with the BigDataViewer [] for visualization of large image datasets on the Fiji open source platform [].The source cell lineage […]

library_books

Renal function in patients with diabetic foot infection; does antibiotherapy affect it?

2016
PMCID: 5423278
PMID: 28497087
DOI: 10.15171/jrip.2017.23

[…] ation (). This is probably due to decreased insulin secretion in people with kidney disorders which might be due to metabolic acidosis, increased parathyroid hormone and decreased vitamin D level (). Mamut et al, demonstrated that diabetes and GFR are significantly associated and independently affect renal function (). In this study, decreased renal function was found in patients receiving antibi […]

library_books

The Arrival of Homo sapiens into the Southern Cone at 14,000 Years Ago

2016
PLoS One
PMCID: 5040268
PMID: 27683248
DOI: 10.1371/journal.pone.0162870

[…] ng of Pleistocene fauna in America is a heavily debated topic [–]. Generally speaking, in North America there is a wide agreement concerning the human predation of mammoth (Mammuthus spp.), mastodon (Mamut americanum) and bison (Bison spp.). Less conclusive is the exploitation of American horse (Equus sp.) [], extinct camelid (Camelops sp.) [] and the giant ground sloth (Magalonix jeffersonii) []. […]

library_books

Annotated checklist of marine fishes from the Sanctuary of Bahía Chamela, Mexico with occurrence and biogeographic data

2016
Zookeys
PMCID: 4740833
PMID: 26877683
DOI: 10.3897/zookeys.554.6106

[…] he Gulf of Tehuantepec and the Gulf of California. The extent of the bay is 28 km from Punta Chamela to Punta Rivas (south to north). The sanctuary includes eight islands called as Pajarera, Cocinas, Mamut, Colorada, San Pedro, San Agustín, San Andrés, and La Negra, and four islets as Los Anegados, El Novillo, La Mosca, and Submarino (CONANP 2008). All of these islands and islets are included in t […]

library_books

An integrated network of Arabidopsis growth regulators and its use for gene prioritization

2015
Sci Rep
PMCID: 4664945
PMID: 26620795
DOI: 10.1038/srep17617

[…] e community (). The AGRIS sub-network consists of known transcriptional regulatory links in Arabidopsis thaliana, and was obtained from the Arabidopsis Gene Regulatory Information Server (AGRIS). The MaMut genetic modification design sub-network contains information about differentially expressed genes when comparing wild-type plants to transgenic plants, and was obtained from the “genetic modific […]


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MaMuT institution(s)
Institut fur Biologie, Humboldt-Universitat zu Berlin, Berlin, Germany; Imagopole, Citech, Institut Pasteur, Paris, France; Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, USA; Berlin Institute for Medical Systems Biology, Max Delbruck Center for Molecular Medicine, Berlin, Germany
MaMuT funding source(s)
Supported by the Einstein Foundation Berlin grant A-2012_114, the Pasteur Institute and ANR Program Grandes Investissement de l’avenir France BioImaging Consortium, the Max Delbruck Center, Max Planck Society, the European Research Council Community’s FP7 grant agreement 260746, and the Howard Hughes Medical Institute.

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