Mango statistics

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Associated diseases

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Mango specifications

Information


Unique identifier OMICS_08783
Name Mango
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Biological technology Illumina
Operating system Unix/Linux, Mac OS
Computer skills Advanced
Stability Stable
Requirements
R, bedtools, bowtie, MACS
Maintained Yes

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Documentation


Publication for Mango

Mango in publications

 (3)
PMCID: 5815073
PMID: 29309647
DOI: 10.1093/nar/gkx1242

[…] and b.bed and -r = fraction of overlap reciprocal for a.bed and b.bed) (). chia-pet interaction data was normalized for differential peak enrichment and identification of genomic proximity using mango with default parameters ()., tfbitr interaction partners (i.e. as revealed by chia-pet) were scanned for enrichment of promoter, enhancer, and insulator elements as represented by chip-seq […]

PMCID: 5663946
PMID: 29089515
DOI: 10.1038/s41598-017-14389-7

[…] were obtained from,. accession numbers for these datasets are as follows: mcf-7 (gse39495), k562 (gse39495), and gm12878 (gse72816). chia-pet tool interactions were preferred over the alternative mango, since calls obtained via mango were sparse and did not include as many broad domain or super enhancer interactions (tableĀ ). to minimize the number of false positive interactions, we instead […]

PMCID: 5042855
PMID: 27548313
DOI: 10.1038/ng.3647

[…] ()., to elucidate how condensin and cohesin build association networks across the genome, we focused on significant associations among association spots. the recently developed algorithm, mango, predicts association spots and significance of the observed associations by considering the distance-dependent background association frequency,. note that the association spots predicted […]


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Mango institution(s)
Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA
Mango funding source(s)
NIH grant U54HG006996, R00HG007356; Damon Runyon Cancer Research Foundation (DRG-2122-12)

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