MANTA specifications

Information


Unique identifier OMICS_31032
Name MANTA
Alternative name MongoDB for the ANalysis of Transcription factor-binding site Alterations
Restrictions to use None
Community driven No
Data access File download
User data submission Not allowed
Maintained Yes

Taxon


  • Primates
    • Homo sapiens

Maintainers


  • person_outline Anthony Mathelier
  • person_outline Wyeth Wasserman

Additional information


The previous version can be consulted at https://github.com/wassermanlab/manta

Publications for MongoDB for the ANalysis of Transcription factor-binding site Alterations

MANTA citation

library_books

PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina

2016
PMCID: 4980111
PMID: 27556059
DOI: 10.1038/mtm.2016.51

[…] thresholds with a low, medium, and high RPS corresponding to mean phastCons scores ≤ 0.17, between 0.17 and 0.79, and > 0.79 respectively.Predicted TFBSs within ChIP-seq peaks were retrieved from the MANTA database. Precisely, TFBS were defined by scanning the peaks from a set of 477 TF ChIP-seq experiments from ENCODE (http://www.encodeproject.org, accessed March 2014) and PAZAR (www.pazar.info, […]

MANTA institution(s)
Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, BC Children’s Hospital Research Institute, University of British Columbia, Vancouver, BC, Canada; Centre for Molecular Medicine Norway (NCMM), Nordic EMBL Partnership, University of Oslo, Oslo, Norway; Department of Cancer Genetics, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway.
MANTA funding source(s)
Supported by WestGrid, Compute Canada/Calcul Canada, the Norwegian Research Council, Helse Sør-Øst, the University of Oslo through the Centre for Molecular Medicine Norway (NCMM), Genome Canada and the Canadian Institutes of Health Research (OnTarget grants 255ONT and BOP-149430), the Natural Sciences and Engineering Research Council of Canada (discovery grant RGPIN-2017-06824), the Weston Brain Institute (20R74681), and the BC Children’s Hospital Foundation and Research Institute (UBC:17W33804 award).

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