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MANTiS specifications

Information


Unique identifier OMICS_30607
Name MANTiS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Michel Milinkovitch <>

Additional information


http://www.mantisdb.org/MANTiS/Files/MANTiSflyer_2.pdf

Information


Unique identifier OMICS_30607
Name MANTiS
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Michel Milinkovitch <>

Additional information


http://www.mantisdb.org/MANTiS/Files/MANTiSflyer_2.pdf

Publication for MANTiS

MANTiS in publications

 (4)
PMCID: 3192992
PMID: 21943375
DOI: 10.1186/2041-9139-2-19

[…] for example, using the gallus sequence only when the taeniopygia sequence is not available, or vice versa., to remove portions of the alignment where sequences might be paralogous, we selected in mantis[] the protein sequences in our reptilian transcriptome dataset for which none of the corresponding gene in d. rerio, x. tropicalis, a. carolinensis, g. gallus, t. guttata, m. musculus, h. […]

PMCID: 3188792
PMID: 21320298
DOI: 10.1186/gb-2011-12-2-401

[…] aim of our study [] was certainly not (contrary to what is implied by vilella et al.) to suggest that the ensembl project performs poor analyses. most of the analyses presented were performed with mantis [], an application system that implements a dynamical programming approach for the mapping of gene gains, duplications and losses on the metazoan phylogenetic tree. mantis [] builds […]

PMCID: 2872876
PMID: 20144222
DOI: 10.1186/gb-2010-11-2-r16

[…] true gene tree versus wrong species tree reconciliation would then generate false duplication events in the first eutherian branch followed by losses (figure ). however, mapping gains and losses in mantis after implementing the three possible topologies among the outgroup, afrotheria, xenarthra, and laurasiatheria plus euarchontoglires did not remove the artifactual peak of gains […]

PMCID: 3055744
PMID: 19495914
DOI: 10.1007/s12575-009-9004-1

[…] the anchors and performing the alignment of the interanchor regions afterward., there are other tools that allow the user to do other things in addition to the alignment of genomes. for example, mantis [] is a phylogenetic-group specific (metazoan phylogeny) tool that analyzes the patterns of gene gains and losses at specific branches of the phylogeny. then, the program infers the gene […]

MANTiS institution(s)
Laboratory of Evolutionary Genetics, Institute for Molecular Biology & Medicine, Université Libre de Bruxelles, Gosselies, Belgium; Bioinformatics & Evolutionary Genomics, Department of Plant Systems Biology, Ghent University, VIB, Gent, Belgium
MANTiS funding source(s)
Supported by grants from the Communauté Francais de Belgique (ARC 1164/20022770), the National Fund for Scientific Research Belgium and the Universite Libre de Bruxelles, and by the Fonds pour la formation à la Recherche dans l’Industrie et dans l’Agriculture.

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