MANTiS statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

MANTiS specifications

Information


Unique identifier OMICS_30607
Name MANTiS
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Michel Milinkovitch

Additional information


http://www.mantisdb.org/MANTiS/Files/MANTiSflyer_2.pdf

Information


Unique identifier OMICS_30607
Name MANTiS
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Michel Milinkovitch

Additional information


http://www.mantisdb.org/MANTiS/Files/MANTiSflyer_2.pdf

Publication for MANTiS

MANTiS citations

 (7)
library_books

Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics

2015
Genome Biol Evol
PMCID: 4494049
PMID: 26133641
DOI: 10.1093/gbe/evv106

[…] hat are already present in the database. Finally, as sequencing throughput and quality will continue to improve, we eventually aim at building a reptilian “phylome” () that could be incorporated into MANTiS, a software that allows users to explore and interrogate genome content and associated functional data within a phylogenetic context (). […]

call_split

Isotopic Incorporation Rates and Discrimination Factors in Mantis Shrimp Crustaceans

2015
PLoS One
PMCID: 4383329
PMID: 25835953
DOI: 10.1371/journal.pone.0122334
call_split See protocol

[…] o a diet of the Pacific, temperate, rocky intertidal snail, Tegula funebralis, which had stable isotope values that were different from C. eburneum () and the soft tissue was approximately 15% of the mantis shrimps’ body mass. Animals received whole snails every three days for the duration of the experiment. After feeding, the mantis shrimp had leftover snail tissue in their cups. We, therefore, c […]

library_books

Reptilian transcriptome v1.0, a glimpse in the brain transcriptome of five divergent Sauropsida lineages and the phylogenetic position of turtles

2011
PMCID: 3192992
PMID: 21943375
DOI: 10.1186/2041-9139-2-19

[…] multi-species multi-gene alignments are paralogous, hence generating potential artifacts (possibly with high support values) during phylogeny inference. In an attempt to exclude that problem, we used MANTiS[] to select, in our reptilian transcriptome dataset, the protein sequences for which the corresponding gene in Danio, Xenopus, Anolis, Gallus, Taeniopygia, Mus, Homo, and Platypus exhibits no k […]

library_books

Considerations for the inclusion of 2x mammalian genomes in phylogenetic analyses

2011
Genome Biol
PMCID: 3188792
PMID: 21320298
DOI: 10.1186/gb-2011-12-2-401

[…] he aim of our study [] was certainly not (contrary to what is implied by Vilella et al.) to suggest that the Ensembl project performs poor analyses. Most of the analyses presented were performed with MANTiS [], an application system that implements a dynamical programming approach for the mapping of gene gains, duplications and losses on the metazoan phylogenetic tree. MANTiS [] builds a relationa […]

library_books

2× genomes depth does matter

2010
Genome Biol
PMCID: 2872876
PMID: 20144222
DOI: 10.1186/gb-2010-11-2-r16

[…] ylome' approach [,] are automated pipelines in which orthologs and paralogs are systematically identified through the estimation of gene family phylogenetic trees. Furthermore, the recently developed MANTiS relational database [] integrates phylogeny-based orthology/paralogy assignments with functional and expression data, allowing users to explore phylogeny-driven (focusing on any set of branches […]

library_books

Historical Constraints on Vertebrate Genome Evolution

2009
Genome Biol Evol
PMCID: 2839353
PMID: 20333219
DOI: 10.1093/gbe/evp052

[…] titute automated pipelines in which orthologs and paralogs are identified through the estimation of gene family phylogenetic trees. Furthermore, the recently developed MANTiS relational database () integrates phylogeny-based orthology/paralogy assignments with functional and expression data, allowing users to explo […]

Citations

Looking to check out a full list of citations?

MANTiS institution(s)
Laboratory of Evolutionary Genetics, Institute for Molecular Biology & Medicine, Université Libre de Bruxelles, Gosselies, Belgium; Bioinformatics & Evolutionary Genomics, Department of Plant Systems Biology, Ghent University, VIB, Gent, Belgium
MANTiS funding source(s)
Supported by grants from the Communauté Francais de Belgique (ARC 1164/20022770), the National Fund for Scientific Research Belgium and the Universite Libre de Bruxelles, and by the Fonds pour la formation à la Recherche dans l’Industrie et dans l’Agriculture.

MANTiS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review MANTiS