MAP-RSEQ specifications

Information


Unique identifier OMICS_04793
Name MAP-RSEQ
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java, Perl, Python, R
Computer skills Advanced
Version 1.2.1
Stability Stable
Maintained Yes

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Documentation


Maintainers


  • person_outline Jean-Pierre Kocher <>
  • person_outline Matthew Bockol <>

MAP-RSEQ article

MAP-RSEQ citation

2017
PMCID: 5217615

[…] were determined on an agilent bioanalyzer dna 1000 chip. samples underwent 101-bp paired-end sequencing on illumina hiseq2000 sequencers. rnaseq measures were processed through the mayo clinic map-rseq pipeline.9 indexed bam files were used for visualizing alignments in integrative genomics viewer.10, protein lysate was extracted from temporal cortex human brain tissue using a lysis buffer […]

MAP-RSEQ institution(s)
Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA; Department of Cancer Biology, Mayo Clinic, Jacksonville, FL, USA; Department of Health Sciences Research, Mayo Clinic, Jacksonville, FL, USA
MAP-RSEQ funding source(s)
Supported by the Mayo Clinic Center for Individualized Medicine (CIM) and Eveleigh family career Development award.

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