Map Viewer pipeline

Map Viewer specifications

Information


Unique identifier OMICS_00921
Name Map Viewer
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publications for Map Viewer

Map Viewer IN pipelines

 (21)
2018
PMCID: 5759835
PMID: 29316879
DOI: 10.1186/s12864-017-4365-3

[…] were chosen as an indication of possible roh islands throughout the genome. the --homozyg-group function implemented in plink v1.90 [84] was used to assess roh islands shared among individuals. the map viewer of the bovine genome umd3.1.1 was used for identification of genes in roh regions, available at “national center for biotechnology information” (ncbi map viewer - […]

2017
PMCID: 5860551
PMID: 28968850
DOI: 10.1093/bfgp/elx018

[…] data from publicly available repositories. notable genome browsers include the ucsc genome browser [112, 113], the ensembl genome browser [114], the washu epigenome browser [115, 116], the ncbi map viewer [117] and mexpress [118]. each browser has a unique interface, set of features and capacity for data integration from external data sources. here, we cover four browsers tailored […]

2014
PMCID: 3930007
PMID: 24548287
DOI: 10.1186/1471-2164-15-137

[…] (overlap an exon of a gene) and mirtron (its pre-mirna sequence represents the entire length of an intron) [38]. mirna genomic location was searched in the cow genome assembly umd3.1 using the ncbi map viewer (http://www.ncbi.nlm.nih.gov/mapview/) and ensemble genome browser (http://uswest.ensembl.org/index.html). core adipose mirnas were classified according to their conservation status […]

2014
PMCID: 4049697
PMID: 24911169
DOI: 10.1371/journal.pone.0098911

[…] genome sequences. finally, homologous orthologs of brown planthopper genes were identified by searching the appropriate chromosomal locations in the selected reference genomes using the ncbi map viewer (http://www.ncbi.nlm.nih.gov/projects/mapview)., qtl analysis was performed using the mapqtl 6.0 software package [48]. the selected virulence traits were host preference and growth rate. […]

2014
PMCID: 4081011
PMID: 24992025
DOI: 10.1371/journal.pone.0097588

[…] center for biotechnology information (blast) and european molecular biology laboratory (ebi). moreover, the fragile sites and genes of integration sites were defined using the ncbi fragile site map viewer and the ucsc blat tool., the principle of the apot assay is a 3′ rapid amplification of cdna ends (race) pcr assay that achieves amplification and cloning of the region between a single […]

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