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mapDamage | Testing for damage patterns in ancient DNA sequences

Computes nucleotide misincorporation and fragmentation patterns using next-generation sequencing reads mapped against a reference genome. mapDamage 2.0 that extends the original features of mapDamage by incorporating a statistical model of DNA damage.

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mapDamage classification

mapDamage specifications

Unique identifier:
OMICS_02099
Interface:
Command line interface
Biological technology:
Illumina
Programming languages:
Python
Version:
2.0
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS
Computer skills:
Advanced
Stability:
Stable

mapDamage distribution

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Publications

Institution(s)

Centre for Geogenetics, Natural History Museum of Denmark, Copenhagen University, Denmark

Funding source(s)

Danish Council for Independent Research; Natural Sciences (FNU); Danish National Research Foundation (Danmarks Grundforskningsfond)

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