MAPIT protocols

MAPIT specifications

Information


Unique identifier OMICS_16769
Name MAPIT
Alternative name MArginal ePIstasis Test
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++, R
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements doParallel, Rcpp, RcppArmadillo, RcppParallel, CompQuadForm
Maintained Yes

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Maintainer


  • person_outline Lorin Crawford <>

Publication for MArginal ePIstasis Test

MAPIT IN pipeline

2015
PMCID: 4473274
PMID: 26086671
DOI: 10.1371/journal.pone.0130415

[…] the ut southwestern genomics core website., selected samples representative of the full spectrum of clinical severity of illness scores in our cohort were sent for optical mapping through opgen’s mapit service (opgen inc., gaithersburg, md). the resulting data was analyzed on opgen’s mapsolver software version 3.2 (opgen inc., gaithersburg, md). whole genome maps of each sample, obtained de […]

MAPIT institution(s)
Department of Statistical Science, Duke University, Durham, NC, USA; Department of Biostatistics, University of Michigan, Ann Arbor, MI, USA; Center for Statistical Genetics, University of Michigan, Ann Arbor, MI, USA; Department of Computer Science, Duke University, Durham, NC, USA; Department of Mathematics, Duke University, Durham, NC, USA; Department of Bioinformatics & Biostatistics, Duke University, Durham, NC, USA
MAPIT funding source(s)
This work was supported by the National Science Foundation Graduate Research Program under Grant No. DGF- 1106401, by grants NSF IIS-1546331, NSF DMS-1418261, NSF IIS-1320357, NSF DMS-1045153, and NSF DMS-1613261, by NIH Grants R01HG009124, R01HL117626, R21ES024834, R01HL133221, and a grant from the Foundation for the National Institutes of Health through the Accelerating Medicines Partnership (BOEH15AMP).

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