MAPMAKER pipeline

MAPMAKER specifications

Information


Unique identifier OMICS_19991
Name MAPMAKER
Alternative names MAPMAKER/QTL, MAPMAKER/EXP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C
Computer skills Advanced
Version 1.1
Maintained Yes

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Documentation


Publication for MAPMAKER

MAPMAKER IN pipelines

 (2)
2012
PMCID: 3527549
PMID: 23285081
DOI: 10.1371/journal.pone.0052538

[…] gene (figure s2), other markers were located outside the hd1 locus., linkage map construction and qtl analysis were performed for the f10, f11 and bc2f7 populations. the maps were constructed using mapmaker/exp 3.0 [21]. distances between markers were presented in centimorgan (cm) derived using kosambi function. qtls were determined with the composite interval mapping of windows qtl […]

2010
PMCID: 3095315
PMID: 20923552
DOI: 10.1186/1471-2229-10-215

[…] gels run in 0.5x tbe; while the microsatellite marker was run on 4% polyacrylamide silver stained gels as described in blair et al. [53]. genetic mapping of successful markers was performed with mapmaker v. 3.0 [56] and a minimum lod of 3.0 and using the genetic map from blair et al. [17]., qtl were detected first with composite interval mapping (cim) analysis that was carried out using […]

MAPMAKER institution(s)
Whitehead Institute for Biomedical Research, Cambridge Center, Cambridge, MA, USA; Massachusetts Institute of Technology, Cambridge, MA, USA; Harvard University, Cambridge, MA, USA; Human Genetics Department, Collaborative Research, inc., Bedford, MA, USA
MAPMAKER funding source(s)
Supported in part by grants from the National Science Foundation and System Development Foundation.

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