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MapMan specifications

Information


Unique identifier OMICS_10372
Name MapMan
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 3.6.0
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline Axel Nagel

Information


Unique identifier OMICS_10372
Name MapMan
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Version 3.6.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Axel Nagel

Publications for MapMan

MapMan citations

 (313)
library_books

Alteration of TAC1 expression in Prunus species leads to pleiotropic shoot phenotypes

2018
PMCID: 5928093
PMID: 29736251
DOI: 10.1038/s41438-018-0034-1

[…] identified, with more genes being upregulated in pillar (453) than downregulated (188) (Dataset ). To evaluate potential changes in regulatory and/or metabolic pathways, all DEGs were examined using MapMan. Gene enrichment analysis revealed significant differential expression of genes involved in biotic and abiotic stress responses along with several other categories that are commonly associated […]

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Comparative analysis of the root transcriptomes of cultivated and wild rice varieties in response to Magnaporthe oryzae infection revealed both common and species specific pathogen responses

2018
PMCID: 5910329
PMID: 29679239
DOI: 10.1186/s12284-018-0211-8
call_split See protocol

[…] agrams were generated using the VennDiagram function in R 3.2.1 with the limma package. Principal component analysis (PCA) was conducted using the PCA function in R 3.2.1 with the FactoMineR package. MapMan analysis was conducted using MapMan 3.6.0 (http://mapman.gabipd.org/web/guest) software. […]

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The biochemical composition and transcriptome of cotyledons from Brassica napus lines expressing the AtGL3 transcription factor and exhibiting reduced flea beetle feeding

2018
BMC Plant Biol
PMCID: 5902958
PMID: 29661140
DOI: 10.1186/s12870-018-1277-6
call_split See protocol

[…] is were identical to those found in Alahakoon et al. []. Cotyledon gene expression changes in the two transgenic hairy leaf lines relative to cv. Westar cotyledon expression were then introduced into MAPMAN for allocation into 36 functional barcode index numbered (BIN) categories []. […]

library_books

Genome wide comparative and evolutionary analysis of Calmodulin binding Transcription Activator (CAMTA) family in Gossypium species

2018
Sci Rep
PMCID: 5882909
PMID: 29615731
DOI: 10.1038/s41598-018-23846-w

[…] ly, 504 genes were PCoEGs (r ≥ 0.95) and 114 genes were NCoEGs (r ≤ −0.95) (Fig.  and Supplementary Dataset S7) with GhCAMTA7A (Fig.  and Supplementary Dataset S7).PCoEGs and NCoEGs were subjected to MapMan (http://gabi.rzpd.de/projects/MapMan/) analysis to identify enrichment of functional and molecular categories. The MapMan analysis revealed that several GhCAMTA2A.2 and GhCAMTA7A positively co- […]

library_books

Transcriptome profiling reveals regulatory mechanisms underlying corolla senescence in petunia

2018
PMCID: 5878830
PMID: 29619227
DOI: 10.1038/s41438-018-0018-1

[…] epresented GO terms were identified using a hypergeometric test with a significance threshold of 0.05 after Benjamini and Hochberg FDR correction with the whole annotated genome as the reference set,.Mapman visualizationwas performed as described previously to identify gene families that may play essential roles in regulating corolla senescence. Contigs were classified into a set of hierarchical f […]

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Transcriptomic profiling of tall fescue in response to heat stress and improved thermotolerance by melatonin and 24 epibrassinolide

2018
BMC Genomics
PMCID: 5870388
PMID: 29587632
DOI: 10.1186/s12864-018-4588-y
call_split See protocol

[…] ent analyses through the Classification SuperViewer Tool (http://bar.utoronto.ca/ntools/cgi-bin/ntools_classification_superviewer.cgi) []. The annotated TAIR IDs of each tall fescue gene were loaded. MapMan (http://mapman.gabipd.org/home) [] and and GO (ftp://ftp.arabidopsis.org/home/tair/Ontologies/Gene_Ontology) were used as classification sources for pathway and GO term enrichment analyses, res […]

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MapMan institution(s)
Max Planck Institute for Molecular Plant Physiology, Golm, Germany

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