MAPPER database statistics

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MAPPER database specifications

Information


Unique identifier OMICS_01877
Name MAPPER database
Alternative names Multi-genome Analysis of Positions and Patterns of Elements of Regulation, MAPPER2
Restrictions to use None
Maintained No

Taxon


  • Invertebrates
    • Drosophila melanogaster
  • Primates
    • Homo sapiens
  • Rodents
    • Mus musculus

Publications for Multi-genome Analysis of Positions and Patterns of Elements of Regulation

MAPPER database citations

 (3)
library_books

Functional polymorphism of the renalase gene is associated with cardiac hypertrophy in female patients with aortic stenosis

2017
PLoS One
PMCID: 5655536
PMID: 29065134
DOI: 10.1371/journal.pone.0186729

[…] E18927, GSE26328, GSE29692 and GSE55579 for DNase-seq data and GSE30263 for ChIP-seq data).For the computational identification of transcription factor which binding sites are affected by rs2296545 a MAPPER2[, ] the platform that combines TRANSFAC[] and JASPAR[] motifs with the search power of profile hidden Markov models, was used (http://genome.ufl.edu/mapper/).The Statistical analysis was perfo […]

library_books

Genome Wide DNA Methylation Analysis Reveals a Potential Mechanism for the Pathogenesis and Development of Uterine Leiomyomas

2013
PLoS One
PMCID: 3688587
PMID: 23818951
DOI: 10.1371/journal.pone.0066632

[…] Viewer (MeV in the TM4 microarray Software Suite; http://www.tm4org/mevhtml) was used for principal component analysis (PCA) . The analysis for ER alpha-target genes analysis was performed using the MAPPER database (http://mapper.chip.org/) . Chromosome distribution analysis was performed using DAVID 6.7 (http://david.abcc.ncifcrf.gov/home.jsp) . Integrative Genomics Viewer (http://www.broadinsti […]

library_books

Integrated Analysis of Transcriptomic and Proteomic Data

2013
Curr Genomics
PMCID: 3637682
PMID: 24082820
DOI: 10.2174/1389202911314020003

[…] MAPPER (Multi-genome Analysis of Positions and Patterns of Elements of Regulation) is a platform for identifying transcription factors binding sites (TFBSs) in multiple genomes []. Binding sites of 4 transcri […]

Citations

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MAPPER database institution(s)
Children's Hospital Informatics Program, Children's Hospital Boston, Harvard Medical School, Enders Research Building, Boston, MA, USA

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