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Mapping and Analysis of SireVirus Elements database MASiVEdb

Online

A collective and systematic resource of Sireviruses in plants. MASiVEdb is unlike any other transposable element database, providing a multitude of highly curated and detailed information on a specific genus across its hosts, such as complete set of coordinates, insertion age, and an analytical breakdown of the structure and gene complement of each element. All data are readily available through basic and advanced query interfaces, batch retrieval, and downloadable files. A purpose-built system is also offered for detecting and visualizing similarity between user sequences and Sireviruses, as well as for coding domain discovery and phylogenetic analysis. MASiVEdb is currently the most comprehensive directory of Sireviruses, and as such complements other efforts in cataloguing plant transposable elements and elucidating their role in host genome evolution.

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MASiVEdb classification

  • Plants

MASiVEdb specifications

Restrictions to use:
None
Maintained:
Yes

MASiVEdb support

Maintainer

  • Alexandros Bousios <>

Credits

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Publications

Institution(s)

Institute of Agrobiotechnology, Centre for Research and Technology Hellas, Thessaloniki, Greece; Department of Genetics and Plant Breeding, Aristotle University of Thessaloniki, Thessaloniki, Greece; Central European Institute of Technology, Masaryk University, Brno, Czech Republic

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