MECAT specifications

Unique identifier:
OMICS_14543
Software type:
Package/Module
Restrictions to use:
None
Biological technology:
Pacific Biosciences, Oxford Nanopore
Programming languages:
C, C++, Perl
Computer skills:
Advanced
Maintained:
Yes
Name:
Mapping Error Correction and de novo Assembly Tool
Interface:
Command line interface
Output data:
An alignment file with the information of 200 000 reads.
Operating system:
Unix/Linux, Mac OS
License:
GNU General Public License version 3.0
Stability:
Stable

versioning

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MECAT distribution

download

MECAT support

Documentation

Maintainer

  • Chuan-Le Xiao <>

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Credits

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Publications

Institution(s)

State Key Laboratory of Ophthalmology, Zhongshan Ophthalmic Center, Sun Yat-sen University, Guangzhou, China; School of Data and Computer Science, and Guangdong Provincial Key Lab of Computational Science, Sun Yat-sen University, Guangzhou, China; Southern Regional Collaborative Innovation Center for Grain and Oil Crops in China, Hunan Agricultural University, Hunan, China; College of Plant Protection, Hunan Agricultural University, Changsha, China; School of Computing, Clemson University, Clemson, SC, USA

Funding source(s)

This work was collectively supported by National Natural Science Foundation of China (31471789, 31600667 and 31200612), the Fundamental Research Funds for the Central Universities (15ykjc23d) and Guangdong Natural Science Foundation (2015A030313127).

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