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MapQTL specifications


Unique identifier OMICS_07090
Name MapQTL
Software type Package/Module
Interface Graphical user interface
Restrictions to use License purchase required
Operating system Windows
License Commercial
Computer skills Medium
Version 6.0
Stability Stable
Maintained Yes


No version available

MapQTL citations


Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don)

BMC Genomics
PMCID: 5914023
PMID: 29685102
DOI: 10.1186/s12864-018-4581-5

[…] validated using Japanese cedar reference maps [].QTL analysis with multiple-QTL model mapping (which estimated the default parameters) was performed to identify QTLs for the male-sterile trait using MapQTL 6.0 software (Kyazma) []. The trait data were recorded with a binary code of fertile (trait value of 0) and male-sterile (trait value of 1). Graphical representation of linkage groups and QTLs […]


A RAD Based Genetic Map for Anchoring Scaffold Sequences and Identifying QTLs in Bitter Gourd (Momordica charantia)

Front Plant Sci
PMCID: 5906717
PMID: 29706980
DOI: 10.3389/fpls.2018.00477

[…] All traits investigated were used for QTL analysis; phenotypic data for each trait in different environments were analyzed separately. QTL analysis was performed using MapQTL 6 () software with the powerful MQM mapping (=composite interval mapping) method. Threshold values were calculated using 1,000 permutations and QTLs were designated when genome-wide LOD scores […]


High Density Genetic Map Construction and Identification of QTLs Controlling Oleic and Linoleic Acid in Peanut using SLAF seq and SSRs

Sci Rep
PMCID: 5883025
PMID: 29615772
DOI: 10.1038/s41598-018-23873-7

[…] he ratio of oleic acid to linoleic acid were identified based on LOD scores larger than the 5% cutoff value determined through 1,000 permutation tests using the CIM method from the ‘qtl’ package of R.MapQTL6.0, which was used to conduct logarithm of odds and percentage of phenotypic variance explained analysis, and interval mapping (IM) was used to detect QTLs for target traits. According to this […]


A high resolution genetic linkage map and QTL fine mapping for growth related traits and sex in the Yangtze River common carp (Cyprinus carpio haematopterus)

BMC Genomics
PMCID: 5879560
PMID: 29609551
DOI: 10.1186/s12864-018-4613-1

[…] QTL analysis was carried out using MapQTL 6.0 program []. Multiple QTL model (MQM) mapping were utilized to detect any significant association between growth-related traits and marker loci in the data sets. Cofactors for MQM analyses w […]


High density SNP mapping and QTL analysis for time of leaf budburst in Corylus avellana L.

PLoS One
PMCID: 5880404
PMID: 29608620
DOI: 10.1371/journal.pone.0195408

[…] USA).The two separate parental maps were used to assign putative QTL locations by performing both the simple interval mapping (SIM) [] and multiple QTL mapping (MQM) [] procedures implemented within MapQTL 5 software []. Putative QTLs were first identified using interval mapping, after which one linked marker per putative QTL was treated as a co-factor to represent genetic background control in t […]


Genome Wide Association Mapping Uncovers Fw1, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry

PMCID: 5940171
PMID: 29602808
DOI: 10.1534/g3.118.200129
call_split See protocol

[…] of three resistant to one susceptible using Chi-square statistics with the R-function ‘chisq.test’.Linkage groups were scanned for quantitative trait loci (QTL) using the interval mapping function in MapQTL 6 (). Several tightly linked SNPs on linkage group 2C, previously identified by GWAS, co-segregated with a QTL that was targeted in subsequent analyses. Significant SNP loci in the haploblock w […]


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MapQTL institution(s)
Kyazma B.V., Wageningen, Netherlands

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