Mapsembler pipeline

Mapsembler specifications

Information


Unique identifier OMICS_18310
Name Mapsembler
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data Some NGS raw read sets.
Input format FASTA, FASTQ, GZIPPED
Operating system Unix/Linux
License CeCILL version 2.1, GNU Affero General Public License version 3
Computer skills Advanced
Version 2_2.2.4
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Pierre Peterlongo <>

Publication for Mapsembler

Mapsembler citation

2016
PMCID: 4750246

[…] implementation has very limited memory impact and runtimes (illumina reads simulated at 2×40x coverage from human chromosome 22 can be treated in less than 10 min, with less than 1 gb of memory)., mapsembler2 [3] is a targeted assembly program. it takes as input one or more set(s) of ngs raw reads (fasta or fastq, gzipped or not) and a set of input sequences, called the ‘starters’. […]

Mapsembler institution(s)
INRIA Rennes - Bretagne Atlantique, EPI Symbiose, Rennes, France; ENS Cachan/IRISA, EPI Symbiose, Rennes, France
Mapsembler funding source(s)
Supported by the INRIA “action de recherche collaborative” ARC Alcovna and by the MAPPI ANR.

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